PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI03G42070.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 385aa MW: 41948.8 Da PI: 6.6024

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI03G42070.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.4	6.8e-07	166	187	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ Cgk F+r nL+ H+r H ORUFI03G42070.1 166 FCGVCGKGFKRDANLRMHMRGH 187 6*******************98 PP
2	zf-C2H2	11.5	0.00092	289	303	6	20
TTEEESSHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHi 20 Cg+sFsrk+ L H ORUFI03G42070.1 289 CGTSFSRKDKLFAHV 303 **************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.14E-5	163	190	No hit	No description
SMART	SM00355	0.011	165	187	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.78	165	192	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	167	187	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.0E-5	167	191	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	39	219	252	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	31	257	279	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MMMSSSVDHF SNNSNNNQAM YLEQDEDFSQ MIMELCDFDA SSTTQARHGG EAAAAGDARA 60 VLTYLTFLEQ KIGHLRGIIS STPNPPPQIV AAELSCIVVQ LVSISKNLAA ARRGGDDAAA 120 DAKHDGSSDA DEGGDGDGDG ERAPPRGPYE VVQIEKEEIL APHVHFCGVC GKGFKRDANL 180 RMHMRGHGDE YKSAAALAKP GGTGAPPSPS RSPARRRFYS CPYVGCKRNR EHKSFQPLKT 240 PTCVKNHYRR SHCDKSFTCR RCNVKRFSVV ADLRTHEKHC GRDRWVCSCG TSFSRKDKLF 300 AHVAIFDGHS PALPPEDYDD DAASGQLPHA AGEAASRTVD TNRFFSDGLM IKGSMDDERG 360 SLSPMGLDYC EFDGIDLFAA AAFDF

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MMMSSSVDHF SNNSNNNQAM YLEQDEDFSQ MIMELCDFDA SSTTQARHGG EAAAAGDARA  60
VLTYLTFLEQ KIGHLRGIIS STPNPPPQIV AAELSCIVVQ LVSISKNLAA ARRGGDDAAA  120
DAKHDGSSDA DEGGDGDGDG ERAPPRGPYE VVQIEKEEIL APHVHFCGVC GKGFKRDANL  180
RMHMRGHGDE YKSAAALAKP GGTGAPPSPS RSPARRRFYS CPYVGCKRNR EHKSFQPLKT  240
PTCVKNHYRR SHCDKSFTCR RCNVKRFSVV ADLRTHEKHC GRDRWVCSCG TSFSRKDKLF  300
AHVAIFDGHS PALPPEDYDD DAASGQLPHA AGEAASRTVD TNRFFSDGLM IKGSMDDERG  360
SLSPMGLDYC EFDGIDLFAA AAFDF

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269\|PubMed:17535918, ECO:0000269\|PubMed:18826429, ECO:0000269\|PubMed:19321711, ECO:0000269\|PubMed:23935008}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269\|PubMed:17535918}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630047.1	0.0	zinc finger protein STOP1 homolog
Swissprot	Q9C8N5	1e-102	STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBL	A0A0E0P3N5	0.0	A0A0E0P3N5_ORYRU; Uncharacterized protein
STRING	ORUFI03G42070.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1512	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	4e-93	C2H2 family protein

Publications ? help Back to Top
Kobayashi Y, et al. Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions. Plant Physiol., 2013. 163(1): p. 180-92 [PMID:23839867] Yokosho K,Yamaji N,Ma JF Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench). Plant Cell Physiol., 2014. 55(12): p. 2077-91 [PMID:25273892] Geng X, et al. LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis. Plant J., 2017. 90(3): p. 491-504 [PMID:28181322] Balzergue C, et al. Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation. Nat Commun, 2017. 8: p. 15300 [PMID:28504266] Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation. Front Plant Sci, 2017. 8: p. 822 [PMID:28567051] Jiang F, et al. Identification and characterization of suppressor mutants of stop1. BMC Plant Biol., 2017. 17(1): p. 128 [PMID:28738784] Daspute AA, et al. Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms. Front Plant Sci, 2017. 8: p. 1358 [PMID:28848571] Sharma A,Wai CM,Ming R,Yu Q Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis. Genome Biol Evol, 2017. 9(9): p. 2170-2190 [PMID:28922793] Zhang Y, et al. The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis. Front Plant Sci, 2018. 9: p. 118 [PMID:29491872]