PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G41410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 216aa MW: 24068.7 Da PI: 9.9418 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 65.9 | 1.2e-20 | 9 | 155 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkya..tgkrknratk.....sg 81 l pG+ FhP+d+ l++ +L++++++ ++e + i+++d+y+++P +L ++++++ wyfF++ + +++ t+ r++ra++ ++ ORUFI03G41410.1 9 LEPGYVFHPSDDGLITLFLRPSIAKIPFED-RLINHADVYSADPAELVGehrpapGTHGSSSVWYFFCSPRFTSKrkTSGRRQRAVAgggggES 101 579************************998.88**************7335666655557779*****97654441155566675443554467 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy.......kgrapkgektdWvmheyrl 128 +Wk+ g +k+v+ ++g+ vg + + + +g+a++ ++ W+m ey l ORUFI03G41410.1 102 VWKSEGGKKAVIGADGRRVGYLQKFSYGvyessssSGSARTFTRLGWCMTEYGL 155 8********************999999655776666788888899*******76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-30 | 7 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.368 | 9 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-12 | 11 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MADDDEIALE PGYVFHPSDD GLITLFLRPS IAKIPFEDRL INHADVYSAD PAELVGEHRP 60 APGTHGSSSV WYFFCSPRFT SKRKTSGRRQ RAVAGGGGGE SVWKSEGGKK AVIGADGRRV 120 GYLQKFSYGV YESSSSSGSA RTFTRLGWCM TEYGLDDDAX SHCRGLRRWR LPAAETNSSR 180 RRTDLAWTKR RSSRGWLPEK SSTTFLARTL MKQVFD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC096687 | 0.0 | AC096687.5 Oryza sativa chromosome 3 BAC OSJNBa0010E04 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629669.1 | 1e-104 | NAC domain-containing protein 71-like | ||||
Refseq | XP_015629670.1 | 1e-104 | NAC domain-containing protein 71-like | ||||
TrEMBL | A0A0E0P3F5 | 1e-156 | A0A0E0P3F5_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G41410.1 | 1e-157 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4363 | 21 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.1 | 1e-09 | NAC domain containing protein 80 |