PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G41360.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 210aa    MW: 23313.9 Da    PI: 9.9422
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G41360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.71.4e-2091531128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrd..kkyatgkrknratk....sgy 82 
                      l pG+ FhP+d+ l++ +L++++++ ++e  + i+++d+y+++P +L         ++++++ wyfF++    +k +t+ r++ra+     +++
  ORUFI03G41360.1   9 LEPGYVFHPSDDGLITLFLRPSIAKIPFED-RLINHADVYSADPAELVGehrpapGTHGSSSVWYFFCSPPftSKRKTSGRRQRAVGggggESV 101
                      579************************998.88**************7335666655557779*****87511444456677777554444678 PP

              NAM  83 WkatgkdkevlskkgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                      Wk+ g +k+v+ ++g+ vg  + + +       +g+a++ ++  W+m ey l
  ORUFI03G41360.1 102 WKSEGGKKAVIGADGRRVGYLQKFSYGvyesssSGSARTFTRLGWCMTEYGL 153
                      ********************99999966677766889999999*******76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.06E-307160IPR003441NAC domain
PROSITE profilePS5100524.8729175IPR003441NAC domain
PfamPF023651.3E-1211152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MADDDEIALE PGYVFHPSDD GLITLFLRPS IAKIPFEDRL INHADVYSAD PAELVGEHRP  60
APGTHGSSSV WYFFCSPPFT SKRKTSGRRQ RAVGGGGGES VWKSEGGKKA VIGADGRRVG  120
YLQKFSYGVY ESSSSGSART FTRLGWCMTE YGLDDDAXSH CRGLRRWRLP AAETNSSRRR  180
TDLAWAKRRS SSGWLREKPS TTFLARTLIK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629669.11e-102NAC domain-containing protein 71-like
RefseqXP_015629670.11e-102NAC domain-containing protein 71-like
TrEMBLA0A0E0P3E71e-151A0A0E0P3E7_ORYRU; Uncharacterized protein
STRINGORUFI03G41360.11e-151(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.18e-10NAC domain containing protein 80