PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G40160.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 535aa    MW: 57862.7 Da    PI: 7.8475
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G40160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.49e-262694023128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknr...atksgyWkatgk 88 
                      pG+rF Ptd+ l+ ++Lk+k +  + ++++ + ik++d++k++  +L+      k+ +  wy Fs+r++ +++g r+ r   +t+ gyWk+   
  ORUFI03G40160.1 269 PGVRFTPTDQKLIIHFLKPKYTLGDaTPTNIIiIKQLDVCKLNLDELHGdlgLGKSLDGAWYVFSPRSRYKERGVRPARgikTTAVGYWKSNSA 362
                      9*******************87666444444459*************9534322334459*****************996534779******** PP

              NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +v++ +ge++g  ++L++  g++p+g+ t+W m+eyr+
  ORUFI03G40160.1 363 EADVVDDDGEVIGRVNSLTLALGHQPRGKATHWRMKEYRI 402
                      **************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.01267440IPR003441NAC domain
SuperFamilySSF1019411.12E-29268439IPR003441NAC domain
PfamPF023652.9E-14269402IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MAAINPVAGE VAAATAKAPP PAMATVRAPL PANHYSPYHS ASAAGSYAAN TQSTSSPVSP  60
ASPPAMISSS SSSSSLPPQQ QCSWQPQPTT FFEANPGYAY QQDHLPAVAG RRFFPPPAMK  120
MQYYHHHQPA GVAMAAPVHS SPLAATSGSN HAVVPDAPPQ EPAKRRRRNT AAAATARRGR  180
GRPRGATASR AHSAPPPPPP TTTAPAITAQ RNDDVNQEDD NQRSKNSVEE AVAVAGGEPP  240
AATSALAIVP RHGDVGDADR PVFPYSDVPG VRFTPTDQKL IIHFLKPKYT LGDATPTNII  300
IIKQLDVCKL NLDELHGDLG LGKSLDGAWY VFSPRSRYKE RGVRPARGIK TTAVGYWKSN  360
SAEADVVDDD GEVIGRVNSL TLALGHQPRG KATHWRMKEY RIPQFQIPLG QEDSNRLVYN  420
VILLRMKVLD EWVLCKLYHS FAYKQKGKCK VHEEGTKSDR GVQDLSIDDD RKTCDIEANK  480
PNKGVDNCNV NICNIEDSKP DGGLQDQSAD DYNVHICDIE DSKPDEANQM EAYKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-1726144611171NO APICAL MERISTEM PROTEIN
1ut4_B3e-1726144611171NO APICAL MERISTEM PROTEIN
1ut7_A3e-1726144611171NO APICAL MERISTEM PROTEIN
1ut7_B3e-1726144611171NO APICAL MERISTEM PROTEIN
3swm_A4e-1726144614174NAC domain-containing protein 19
3swm_B4e-1726144614174NAC domain-containing protein 19
3swm_C4e-1726144614174NAC domain-containing protein 19
3swm_D4e-1726144614174NAC domain-containing protein 19
3swp_A4e-1726144614174NAC domain-containing protein 19
3swp_B4e-1726144614174NAC domain-containing protein 19
3swp_C4e-1726144614174NAC domain-containing protein 19
3swp_D4e-1726144614174NAC domain-containing protein 19
4dul_A3e-1726144611171NAC domain-containing protein 19
4dul_B3e-1726144611171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1375070.0AC137507.3 Oryza sativa chromosome 3 BAC OSJNBb0033J23 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0P2Z00.0A0A0E0P2Z0_ORYRU; Uncharacterized protein
STRINGORUFI03G40160.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131302130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.13e-23NAC domain containing protein 25