PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G40090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 257aa MW: 26885.5 Da PI: 6.161 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16 | 2.3e-05 | 65 | 88 | 3 | 26 |
HHHHHHHHHHHHHHHHHHHHHHCT CS HLH 3 rahnerErrRRdriNsafeeLrel 26 r+h e+E+rRR+ri+s +++Lr + ORUFI03G40090.1 65 RNHREAEKRRRERIKSHLDRLRAI 88 78*******************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.01E-7 | 65 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MFPVEVAAAA GRMQGEAVVP MMLPPFFMDS GIWPAAAGVV DVAASAEEEA AAAAAAQDRA 60 LAASRNHREA EKRRRERIKS HLDRLRAIDK ASLLAKAVER VRDLKQRMAG IGEAAPAHLF 120 PTEHDEIVVL ASGGGGVGGA GGAAAVFEAS VCCDDRSDLL PELIETLRAL RLRTLRAEMA 180 TLGGRVRNVL VLARDAGGAG EGGDGDDDRA GYSAVSNDGG DFLKEALRAL VERPGAAAGD 240 RPKRRRVVSD MNMQAAA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 242 | 246 | KRRRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629146.1 | 2e-95 | transcription factor bHLH106 | ||||
TrEMBL | A0A0E0P2Y3 | 1e-177 | A0A0E0P2Y3_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G40090.1 | 1e-178 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9578 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 1e-15 | bHLH family protein |