PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI03G38970.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 423aa MW: 44106.7 Da PI: 4.8606

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI03G38970.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42	2e-13	232	284	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 + +rrkq+NRe+ArrsR RK a + eLe v +L eN++L +l ++++ ORUFI03G38970.1 232 RLQRRKQSNRESARRSRSRKAAHLNELEAQVSQLRVENSSLLRRLADVNQKYN 284 789***************************************99988888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-17	228	292	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.3E-10	230	284	No hit	No description
PROSITE profile	PS50217	11.392	230	284	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.31E-9	232	282	No hit	No description
Pfam	PF00170	1.2E-10	232	283	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	2.4E-52	299	416	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071215	Biological Process	cellular response to abscisic acid stimulus
GO:0071333	Biological Process	cellular response to glucose stimulus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MERVFSVEEI SDPFWVPPPP PQSAAAAQQQ GGGGVASGGG GGVAGGGGGG NAMNRCPSEW 60 YFQKFLEEAV LDSPVPNPSP RAEAGGIRGA GGVVPVDVKQ PQLSAAAAAT TSAVVDPVEY 120 NAMLKQKLEK DLAAVAMWRA SGTVPPERPG AGSSLLNADV SHIGAPNSIG GNATPVQNML 180 SGPSGGSGSQ LVQNVDVLVK QPTSSSSREQ SDDDDMEGEA ETTGTARPAD QRLQRRKQSN 240 RESARRSRSR KAAHLNELEA QVSQLRVENS SLLRRLADVN QKYNDAAVDN RVLKADVETL 300 RAKVKMAEDS VKRVTGMNAL FPAASDMSSL SMPFNSSPSE ATSDAAVPIQ DDPNNYFATN 360 NDIGGNNNYM PDIPSSAQED EDFVNGALAA GKIGRPASLQ RVASLEHLQK RMCGGPASSG 420 STS

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MERVFSVEEI SDPFWVPPPP PQSAAAAQQQ GGGGVASGGG GGVAGGGGGG NAMNRCPSEW  60
YFQKFLEEAV LDSPVPNPSP RAEAGGIRGA GGVVPVDVKQ PQLSAAAAAT TSAVVDPVEY  120
NAMLKQKLEK DLAAVAMWRA SGTVPPERPG AGSSLLNADV SHIGAPNSIG GNATPVQNML  180
SGPSGGSGSQ LVQNVDVLVK QPTSSSSREQ SDDDDMEGEA ETTGTARPAD QRLQRRKQSN  240
RESARRSRSR KAAHLNELEA QVSQLRVENS SLLRRLADVN QKYNDAAVDN RVLKADVETL  300
RAKVKMAEDS VKRVTGMNAL FPAASDMSSL SMPFNSSPSE ATSDAAVPIQ DDPNNYFATN  360
NDIGGNNNYM PDIPSSAQED EDFVNGALAA GKIGRPASLQ RVASLEHLQK RMCGGPASSG  420
STS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:11572990, ECO:0000269\|PubMed:9049271}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00040	PBM	Transfer from AT5G28770	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT829375	0.0	CT829375.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI207J16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631619.1	0.0	bZIP transcription factor RISBZ2-like
Swissprot	Q7X9A8	0.0	RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBL	A0A0E0P2I6	0.0	A0A0E0P2I6_ORYRU; Uncharacterized protein
STRING	ORUFI03G38970.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3488	38	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	9e-33	bZIP family protein

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Yang D,Wu L,Hwang YS,Chen L,Huang N Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter. Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43 [PMID:11572990] Cheng S,Wang Z,Hong M Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene. Sci. China, C, Life Sci., 2002. 45(4): p. 352-60 [PMID:18759022]