PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G38070.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 343aa    MW: 34681.2 Da    PI: 7.8302
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G38070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.21e-36491631105
              TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec....eaesss 79 
                      a+g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LGfd++sk+ieWL+++a pai+ l+++                  +    +  +s+
  ORUFI03G38070.1  49 ATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDTLPSLdpaafaaiphaA------AdaapTRRRSQ 136
                      5899*************************************************************888886554321......12223233333 PP

              TCP  80 ssasnsssgkaaksaa.kskksqksaa 105
                      +++++ s+++ ++s+  +sk s+k+ +
  ORUFI03G38070.1 137 QQQQQLSNKSGCSSTSeTSKGSDKEVT 163
                      333333333333333323333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.5E-3551159IPR005333Transcription factor, TCP
PROSITE profilePS5136932.60752110IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEAAVGDGEG GGGGGGRGKR GRGGGGGEMV EAVWGQTGST ASRIYRVRAT GGKDRHSKVY  60
TAKGIRDRRV RLSVATAIQF YDLQDRLGFD QPSKAIEWLI NAASPAIDTL PSLDPAAFAA  120
IPHAAADAAP TRRRSQQQQQ QLSNKSGCSS TSETSKGSDK EVTVASAPAQ AASFTELLIA  180
GVAASSAGGG AIGNGADCVG IAHPGKGGAE GASTYGFSAA SSFGDAPPIG MVPAPPFNFS  240
APGADMAAHY SLAQDQLAAP PPPAGGDYNL NFSMSSGFLG ANRGTLQSNS PSNMSGHHHH  300
HHQQQLQRLD GSTISFLLGH AAAAAHPAAS EGQITSTAAL QLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-2657111155Putative transcription factor PCF6
5zkt_B7e-2657111155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1333400.0AC133340.4 Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence.
GenBankAK2427880.0AK242788.1 Oryza sativa Japonica Group cDNA, clone: J090057A17, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629084.10.0transcription factor PCF6
SwissprotQ10CE80.0PCF6_ORYSJ; Transcription factor PCF6
TrEMBLA0A0E0P2790.0A0A0E0P279_ORYRU; Uncharacterized protein
STRINGORUFI03G38070.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-34TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2