PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G37130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TALE | ||||||||
Protein Properties | Length: 205aa MW: 23161.5 Da PI: 8.2207 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.6 | 1.8e-07 | 121 | 150 | 26 | 55 |
-HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 26 saeereeLAkklgLterqVkvWFqNrRake 55 ++ e+ LA+ +gL+++q+++WF N+R ++ ORUFI03G37130.1 121 QEMEKMTLAQTTGLDQKQISNWFINQRKRH 150 5668889********************885 PP | |||||||
2 | ELK | 27.9 | 5.2e-10 | 31 | 52 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LKhqLl KY+g+Lg+L+q Fs ORUFI03G37130.1 31 QLKHQLLMKYGGSLGDLRQAFS 52 59*****************776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51213 | 9.097 | 31 | 51 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.7E-9 | 31 | 52 | IPR005539 | ELK domain |
SMART | SM01188 | 4.7E-5 | 31 | 52 | IPR005539 | ELK domain |
SMART | SM00389 | 0.0033 | 53 | 157 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-22 | 56 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.122 | 119 | 153 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.98E-10 | 119 | 160 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.7E-10 | 122 | 149 | IPR008422 | Homeobox KN domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-22 | 122 | 154 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.95E-8 | 124 | 153 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 128 | 151 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MDSNCEGTGS SEEEQDTSCP EAEEIDPSDK QLKHQLLMKY GGSLGDLRQA FSKRTKKGKL 60 PKEARLKLLH WWELHYDKWP YPSVRTHIYA SHLINSTTFF CTKLDLMKMR ELIGCTCVYE 120 QEMEKMTLAQ TTGLDQKQIS NWFINQRKRH WKPTPVAGMT FPTVEAAGGG FRHSGHGGGL 180 AAAAALPLYM GSWPFVVDGM YRLGS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC092781 | 0.0 | AC092781.6 Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879690.1 | 1e-107 | homeobox protein knotted-1-like 9 | ||||
Swissprot | Q10EC6 | 1e-108 | KNOS9_ORYSJ; Homeobox protein knotted-1-like 9 | ||||
TrEMBL | A0A0E0P1V7 | 1e-153 | A0A0E0P1V7_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G37130.1 | 1e-154 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14756 | 13 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 9e-31 | KNOTTED-like from Arabidopsis thaliana |