PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G37080.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 385aa    MW: 42513.8 Da    PI: 6.7968
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G37080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.11.1e-063043312855
                      HHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  28 eereeLAkklgLterqVkvWFqNrRake 55 
                       e+  LA+ +gL+++q+ +WF N+R ++
  ORUFI03G37080.1 304 MEKMTLAQTTGLDQKQINNWFINQRKRH 331
                      57789********************885 PP
2ELK37.45.4e-13217238122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      +LKhqLlrKY+g+Lg+L+q Fs
  ORUFI03G37080.1 217 QLKHQLLRKYGGSLGDLRQVFS 238
                      59*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.4E-1981125IPR005540KNOX1
PfamPF037905.4E-1982121IPR005540KNOX1
SMARTSM012567.2E-26136188IPR005541KNOX2
PfamPF037911.3E-19146186IPR005541KNOX2
SMARTSM011882.3E-5217238IPR005539ELK domain
PfamPF037893.3E-8217235IPR005539ELK domain
PROSITE profilePS512139.324217237IPR005539ELK domain
SMARTSM003890.001239338IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-24242268IPR009057Homeodomain-like
PROSITE profilePS5007110.171300334IPR001356Homeobox domain
SuperFamilySSF466893.72E-9303338IPR009057Homeodomain-like
PfamPF059203.6E-10303330IPR008422Homeobox KN domain
Gene3DG3DSA:1.10.10.603.5E-24303334IPR009057Homeodomain-like
CDDcd000862.30E-7305334No hitNo description
PROSITE patternPS000270309332IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MESFASLAGG GSSSTTARLP ELISPENPDH ISPPPLLYQL LAGPESSARQ HGHDGHHHGG  60
GGGAAAAAAV QGQVSPAGAE AAVKAEIMSH PQYSALLAAY LGCKKVGAPP DVLTKLTAVP  120
AAQQLDEADG HPRRRHEPQR DDDPDQLDQF MDAYCSMLTR YREELERPIQ EAAEFFSRVE  180
TQLDSLAESN CEGTGSSEEE QDQDTSCPEE IDPSDKQLKH QLLRKYGGSL GDLRQVFSKR  240
TKKGKLPKEA RQKLLHWWEL HYKWPYPSVR THHIPFDQFN HIFCTKLTRL KMREIYGVVY  300
EQEMEKMTLA QTTGLDQKQI NNWFINQRKR HWKPTPVAGT AFPTMEAAGG GFRHSGHGGG  360
LAAAAALPLY MGRPFVVDGM YRLGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0288840.0AB028884.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH43, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879466.10.0homeobox protein knotted-1-like 8 isoform X1
SwissprotQ10ED20.0KNOS8_ORYSJ; Homeobox protein knotted-1-like 8
TrEMBLA0A0E0P1V20.0A0A0E0P1V2_ORYRU; Uncharacterized protein
STRINGORUFI03G37080.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147561321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.13e-64KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]