PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G34420.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 352aa    MW: 37503.8 Da    PI: 7.2964
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G34420.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.89.9e-101431801954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  ORUFI03G34420.2 143 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 180
                      664459******************************88 PP

2BELL91.11.1e-2921741972
             BELL 19 VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                     Vd+rY++y++q+q+v++ F+ v+g g+a+pYt+lA+ka+SrhFrcLkdaia q+
  ORUFI03G34420.2 21 VDRRYNHYCDQMQMVVNFFDSVMGFGAATPYTALAQKAMSRHFRCLKDAIAAQL 74
                     9**************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.6E-6272IPR006563POX domain
PfamPF075266.6E-272171IPR006563POX domain
PROSITE profilePS5007112.6121184IPR001356Homeobox domain
SMARTSM003891.6E-9124188IPR001356Homeobox domain
CDDcd000868.12E-14124185No hitNo description
SuperFamilySSF466898.13E-18125191IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-29127190IPR009057Homeodomain-like
PfamPF059201.4E-18141180IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MHGYSYSPKR RWASSVVGAF VDRRYNHYCD QMQMVVNFFD SVMGFGAATP YTALAQKAMS  60
RHFRCLKDAI AAQLRGTCEA LGEKDAGTGS GLTKGETPRL RAIDQSLRQQ RAFHHMGIME  120
QEAWRPQRGL PERSVNILRS WLFEHFLHPY PSDADKHLLA RQTGLSRNQV SNWFINARVR  180
LWKPMIEEMY QQECKELEGS SGAGDDPSGA DDTHSPTTTA AAHHQHRHGQ LMVEHGGASS  240
GGGAAMSSHK HEPGVVAGPS SSSAAAVADA AFVGIDPVEL LGGDGAAADD LYGRFDPAGA  300
VRVRYGPAGA AAGAAAAAAG DVSLTLGLQH AGAGNAGPDG SGRFSLRDYS GC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-18130188563Homeobox protein Meis2
4xrm_B3e-18130188563Homeobox protein Meis2
5bng_A3e-18130188159Homeobox protein Meis2
5bng_B3e-18130188159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2874760.0AK287476.1 Oryza sativa Japonica Group cDNA, clone: J043023B19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631398.10.0BEL1-like homeodomain protein 4
SwissprotQ94KL51e-111BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBLA0A0E0P0V80.0A0A0E0P0V8_ORYRU; Uncharacterized protein
STRINGOS03T0732100-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.31e-107BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]