PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G34420.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TALE | ||||||||
Protein Properties | Length: 352aa MW: 37503.8 Da PI: 7.2964 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.8 | 9.9e-10 | 143 | 180 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + ORUFI03G34420.2 143 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 180 664459******************************88 PP | |||||||
2 | BELL | 91.1 | 1.1e-29 | 21 | 74 | 19 | 72 |
BELL 19 VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 Vd+rY++y++q+q+v++ F+ v+g g+a+pYt+lA+ka+SrhFrcLkdaia q+ ORUFI03G34420.2 21 VDRRYNHYCDQMQMVVNFFDSVMGFGAATPYTALAQKAMSRHFRCLKDAIAAQL 74 9**************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.6E-6 | 2 | 72 | IPR006563 | POX domain |
Pfam | PF07526 | 6.6E-27 | 21 | 71 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.6 | 121 | 184 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-9 | 124 | 188 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.12E-14 | 124 | 185 | No hit | No description |
SuperFamily | SSF46689 | 8.13E-18 | 125 | 191 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.3E-29 | 127 | 190 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.4E-18 | 141 | 180 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MHGYSYSPKR RWASSVVGAF VDRRYNHYCD QMQMVVNFFD SVMGFGAATP YTALAQKAMS 60 RHFRCLKDAI AAQLRGTCEA LGEKDAGTGS GLTKGETPRL RAIDQSLRQQ RAFHHMGIME 120 QEAWRPQRGL PERSVNILRS WLFEHFLHPY PSDADKHLLA RQTGLSRNQV SNWFINARVR 180 LWKPMIEEMY QQECKELEGS SGAGDDPSGA DDTHSPTTTA AAHHQHRHGQ LMVEHGGASS 240 GGGAAMSSHK HEPGVVAGPS SSSAAAVADA AFVGIDPVEL LGGDGAAADD LYGRFDPAGA 300 VRVRYGPAGA AAGAAAAAAG DVSLTLGLQH AGAGNAGPDG SGRFSLRDYS GC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 3e-18 | 130 | 188 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 3e-18 | 130 | 188 | 5 | 63 | Homeobox protein Meis2 |
5bng_A | 3e-18 | 130 | 188 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 3e-18 | 130 | 188 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287476 | 0.0 | AK287476.1 Oryza sativa Japonica Group cDNA, clone: J043023B19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631398.1 | 0.0 | BEL1-like homeodomain protein 4 | ||||
Swissprot | Q94KL5 | 1e-111 | BLH4_ARATH; BEL1-like homeodomain protein 4 | ||||
TrEMBL | A0A0E0P0V8 | 0.0 | A0A0E0P0V8_ORYRU; Uncharacterized protein | ||||
STRING | OS03T0732100-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23760.3 | 1e-107 | BEL1-like homeodomain 4 |
Publications ? help Back to Top | |||
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