PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI03G34250.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRF

Protein Properties

Length: 603aa MW: 62823.8 Da PI: 7.312

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI03G34250.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.6	2.5e-24	223	267	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e ORUFI03G34250.1 223 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 267 79****************************************986 PP
2	QLQ	57.3	4.6e-20	157	193	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKyLaan PvP+ Ll +i++ ORUFI03G34250.1 157 GPFTPSQWIELEHQALIYKYLAANSPVPHSLLIPIRR 193 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.2E-11	157	193	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.087	158	193	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.0E-14	158	192	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.455	223	267	IPR014977	WRC domain
Pfam	PF08879	2.2E-20	224	266	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence Send to blast
MDLGGGVGVV MAAVDGGGGG ELGGGGLLGS RLMKHGRGNA GDQEHGWRPP AKQARGGDAS 60 SAAAAVAAAA AVSEAVKVAA PFLLGASCSP GHGGEQMLSF SSSASSCSSG GGGAAVAAAA 120 AAGGAMPLYY GTPASCSGLS SVSLSSSMQG AMARVRGPFT PSQWIELEHQ ALIYKYLAAN 180 SPVPHSLLIP IRRSLTSPYS PAYFGSSTLG WGSFQLGYSG SADPEPGRCR RTDGKKWRCS 240 RDAVADQKYC ERHMNRGRHR SRKHVEGQPG HAAKAMPAAV AAAAASATQP SAPAAHSGGA 300 VAGLAINHQH QQMKNYAANT ANPCSLQYSR DLANKHNESE QVQDSDSLSM LTSISTRNTG 360 SLFPFSKQHN PFEVSNSRPD FGLVSPDSLM SSPHSSLENV NLLTSQSLNE QQSSVSLQHF 420 VDWPRTPAQG ALAWPDAEDM QAQRSQLSIS APMASSDLSS ASTSPIHEKL MLSPLKLSRE 480 YSPIGLGFAA NRDEVNQGEA NWMPMFRDSL MGGPLGEVLT KNNNMEARNC LSESLNLLND 540 GWDSSSGFDS SPVGVLQKTT FGSVSSSTGS SPRLENHSVY DGNSNLRDDL GSVVVNHPSI 600 RLV

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence Send to blast

MDLGGGVGVV MAAVDGGGGG ELGGGGLLGS RLMKHGRGNA GDQEHGWRPP AKQARGGDAS  60
SAAAAVAAAA AVSEAVKVAA PFLLGASCSP GHGGEQMLSF SSSASSCSSG GGGAAVAAAA  120
AAGGAMPLYY GTPASCSGLS SVSLSSSMQG AMARVRGPFT PSQWIELEHQ ALIYKYLAAN  180
SPVPHSLLIP IRRSLTSPYS PAYFGSSTLG WGSFQLGYSG SADPEPGRCR RTDGKKWRCS  240
RDAVADQKYC ERHMNRGRHR SRKHVEGQPG HAAKAMPAAV AAAAASATQP SAPAAHSGGA  300
VAGLAINHQH QQMKNYAANT ANPCSLQYSR DLANKHNESE QVQDSDSLSM LTSISTRNTG  360
SLFPFSKQHN PFEVSNSRPD FGLVSPDSLM SSPHSSLENV NLLTSQSLNE QQSSVSLQHF  420
VDWPRTPAQG ALAWPDAEDM QAQRSQLSIS APMASSDLSS ASTSPIHEKL MLSPLKLSRE  480
YSPIGLGFAA NRDEVNQGEA NWMPMFRDSL MGGPLGEVLT KNNNMEARNC LSESLNLLND  540
GWDSSSGFDS SPVGVLQKTT FGSVSSSTGS SPRLENHSVY DGNSNLRDDL GSVVVNHPSI  600
RLV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073578	0.0	AK073578.1 Oryza sativa Japonica Group cDNA clone:J033048N01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015628630.1	0.0	growth-regulating factor 6
Swissprot	Q6AWY3	0.0	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A0E0P0T7	0.0	A0A0E0P0T7_ORYRU; Uncharacterized protein
STRING	ORUFI03G34250.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	6e-53	growth-regulating factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]