PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G34080.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 347aa    MW: 38023.7 Da    PI: 5.0395
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G34080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.6e-092552892155
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      + +yps+ e+  LA+++gL+++q+ +WF N+R ++
  ORUFI03G34080.1 255 RWPYPSEMEKIALAESTGLEQKQINNWFINQRKRH 289
                      669*****************************885 PP
2ELK33.21.1e-11210230222
              ELK   2 LKhqLlrKYsgyLgsLkqEFs 22 
                      LK++LlrKYsgyLg+L++E+s
  ORUFI03G34080.1 210 LKRHLLRKYSGYLGGLRKELS 230
                      9******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012561.9E-24107158IPR005541KNOX2
PfamPF037913.7E-19113156IPR005541KNOX2
SMARTSM011882100116136IPR005539ELK domain
PROSITE profilePS5121310.109209229IPR005539ELK domain
SMARTSM011885.4E-6209230IPR005539ELK domain
PfamPF037898.2E-8210230IPR005539ELK domain
PROSITE profilePS5007113.054229292IPR001356Homeobox domain
SuperFamilySSF466898.98E-19230300IPR009057Homeodomain-like
SMARTSM003892.1E-12231296IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-27234295IPR009057Homeodomain-like
CDDcd000861.22E-11241292No hitNo description
PfamPF059204.3E-16249288IPR008422Homeobox KN domain
PROSITE patternPS000270267290IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEELEGHRGE GRLPPPPPLL PFPKVSVQVY TVPSSSTAAS AAAAGGARQA VAPATRDGGD  60
GGGRAAGVLD DPVKARIVGC PAEAAEEIAA AARVREARQR AAAAASRMPP APEDPELDQF  120
MEDYCKLLVE CKEELSRPLQ EAEEFLRTVE SELNSINSGP PLTALISESK AGLDSSDDDE  180
HEDGSGMEMM EAAEDEDLGI IDPRSDDKAL KRHLLRKYSG YLGGLRKELS KKRKKGKLPK  240
EARQKLLTWW ELHYRWPYPS EMEKIALAES TGLEQKQINN WFINQRKRHW KPTEEMEFAV  300
MEAYHHQSTD AAAAFYVDVD ARLVGATAAA PASAVYTARP DHGVWRA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224233LRKELSKKRK
2230234KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0716640.0AB071664.1 Oryza sativa Indica Group mRNA for transcription factor OSH3, complete cds, cultivar:IR24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628822.11e-160homeobox protein knotted-1-like 7
SwissprotQ948L51e-161KNOS7_ORYSJ; Homeobox protein knotted-1-like 7
TrEMBLA0A0E0P0R50.0A0A0E0P0R5_ORYRU; Uncharacterized protein
STRINGORUFI03G34080.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150631819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.13e-60KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y,Aoki Y,Matsuoka M
    A loss-of-function mutation in the rice KNOX type homeobox gene, OSH3.
    Plant Cell Physiol., 2002. 43(1): p. 44-51
    [PMID:11828021]
  2. Sato Y,Fukuda Y,Hirano HY
    Mutations that cause amino acid substitutions at the invariant positions in homeodomain of OSH3 KNOX protein suggest artificial selection during rice domestication.
    Genes Genet. Syst., 2001. 76(6): p. 381-92
    [PMID:11922107]