PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G33950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 359aa MW: 38147.9 Da PI: 5.7583 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.9 | 1.6e-12 | 180 | 227 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ ++f L +++P + kK++Ka++L A++Y+k+Lq ORUFI03G33950.1 180 QEHILAERKRREKLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLQ 227 67999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.025 | 177 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.51E-18 | 180 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-17 | 180 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-10 | 180 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.47E-13 | 182 | 231 | No hit | No description |
SMART | SM00353 | 6.1E-15 | 183 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MATQWFSNMV MDEPSFFHQW QSDGLLEQYT EQQIAVAFGQ AGEADAAAAA AATMVQQQQY 60 AAAAAAEHRP RKAAKVNTSW DSCITEQGSP ADSSSPTILS FGGHADAAAA AAFASAGQAQ 120 SAPYYGGASA AALKPKQELD AAAAPFSQAR PVKRSYDAMV AADVAKAPAA AASRPASQNQ 180 EHILAERKRR EKLSQRFIAL SKIVPGLKKM DKASVLGDAI KYVKQLQDQV KGLEEEARRR 240 PVEAAVLVKK SQLSADDDDG SSCDENFDGG EATAGLPEIE ARVSERTVLV KIHCENRKGA 300 LITALSEVET IGLTIMNTNV LPFTSSSLDI TIMATAGENF SLSVKDIVKK LNQAFKLSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-13 | 182 | 236 | 9 | 63 | Transcription factor MYC2 |
5gnj_B | 2e-13 | 182 | 236 | 9 | 63 | Transcription factor MYC2 |
5gnj_E | 2e-13 | 182 | 236 | 9 | 63 | Transcription factor MYC2 |
5gnj_F | 2e-13 | 182 | 236 | 9 | 63 | Transcription factor MYC2 |
5gnj_G | 2e-13 | 182 | 236 | 9 | 63 | Transcription factor MYC2 |
5gnj_I | 2e-13 | 182 | 236 | 9 | 63 | Transcription factor MYC2 |
5gnj_M | 2e-13 | 182 | 236 | 9 | 63 | Transcription factor MYC2 |
5gnj_N | 2e-13 | 182 | 236 | 9 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 190 | ERKRRE |
2 | 186 | 191 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120539 | 0.0 | AK120539.1 Oryza sativa Japonica Group cDNA clone:J013129F07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627848.1 | 0.0 | transcription factor bHLH18 | ||||
Refseq | XP_015627849.1 | 0.0 | transcription factor bHLH18 | ||||
TrEMBL | A0A0E0P0P5 | 0.0 | A0A0E0P0P5_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G33950.2 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4213 | 35 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22750.2 | 2e-46 | bHLH family protein |