PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G31950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 749aa MW: 79374.4 Da PI: 6.9565 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.6 | 3.7e-07 | 311 | 331 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg ORUFI03G31950.1 311 PCPDFRK-GVCRRGDMCEYAHG 331 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12796 | 9.2E-11 | 93 | 162 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.019 | 93 | 123 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF48403 | 2.18E-15 | 93 | 171 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.2E-17 | 93 | 171 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.467 | 93 | 168 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.039 | 128 | 160 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.876 | 128 | 163 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 7.3E-5 | 129 | 144 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 7.3E-5 | 147 | 161 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 1.1E-5 | 306 | 332 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-4 | 310 | 333 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.375 | 311 | 333 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-4 | 311 | 331 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-4 | 339 | 369 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 37 | 341 | 364 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 749 aa Download sequence Send to blast |
MNGTPISASA AAGVDGVGAA VALAAATKKS AAAAAAVAEM AKTLTVDTDD AFAGLLELAA 60 DDDAEGLRRA LERAPPAAAD EAGLWYGRRK VLEHRTPLMV AATYGSLAVL RLLLSLPSVD 120 VNRRCGSDGT TALHCAASGG SPSCVEAVKL LLAAGADADA TDASGYRPAD VISVPPKMFD 180 AKIALQDLLG CPKAGHGVLR VVTRAANSML SPVSSPTAED ARSPSAAVMM TTKFADLPRV 240 VTSEKKEYPV DPSLPDIKNS IYASDEFRMY SFKIRPCSRA YSHDWTECPF VHPGENARRR 300 DPRKYHYSCV PCPDFRKGVC RRGDMCEYAH GVFECWLHPA QYRTRLCKDG TSCNRRVCFF 360 AHTTDELRPL YVSTGSAVPS PRASATATME MAAAMGLMPG SPSSVSAVMS PFTPPMSPSG 420 NGMPPSLGWQ QPNVPTLHLP GSSLQSSRLR TSLSARDMPA DDYSLMQDID SQLINDLCYS 480 RIGSSTGNHT SRTKSLNPSN LDDLFSAEMV SSPRYSNADQ GGMFSPSHKA AFLNQFQQQQ 540 QALLSPINTV FSPKSVDNQQ LPSHSSLLQA SLGISSPGRM SPRCVESGSP MNSHLAAALA 600 QREKQQQTMR SLSSRDLGPS AARASGVVGS PLSSSWSKWG SPSGTPDWGV NGEELGKLRR 660 SSSFELRSGG DDPDLSWVHT LVKESPPEKQ VTTAESINSV GPSPLMPPSV SNGEGPSLNA 720 PLDGHDQAAV IGALLEQMQL DQHIGSLAT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC097368 | 0.0 | AC097368.3 Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632054.1 | 0.0 | zinc finger CCCH domain-containing protein 24 | ||||
Swissprot | Q10EL1 | 0.0 | C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24 | ||||
TrEMBL | A0A0E0NZZ6 | 0.0 | A0A0E0NZZ6_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2XL03 | 0.0 | A2XL03_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI03G31950.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS03T0698800-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP823 | 37 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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