PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G30870.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 736aa    MW: 78703.2 Da    PI: 6.13
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G30870.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.87.9e-086747062254
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      ++yp+ +e+  LA  +gL+ +q+++WF N R +
  ORUFI03G30870.2 674 HPYPNDNEKLMLAVATGLSRTQISNWFINARVR 706
                      89*****************************88 PP
2BELL56.76.1e-195325941072
             BELL  10 akLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      akLlsll e++ r+++y  +l+ v +sFe + g g+ + Yt+l  +a+S hF +L+ ai  ++
  ORUFI03G30870.2 532 AKLLSLLSELESRHEHYFGELRRVSASFEPALGAGATAGYTALMAQAMSHHFGSLRRAILRKL 594
                      8**********************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.9E-16472592IPR006563POX domain
PfamPF075264.8E-20478590IPR006563POX domain
PROSITE profilePS5007111.175647710IPR001356Homeobox domain
CDDcd000861.47E-10650711No hitNo description
SMARTSM003895.4E-9650714IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-25655716IPR009057Homeodomain-like
SuperFamilySSF466891.92E-16656718IPR009057Homeodomain-like
PfamPF059201.3E-16667706IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MATYYSSPGN ERDSQAMYPA DSGNSSYPVP SAIGNMLYPG NGSSGPYTEF SGIIQHQQNF  60
MELPGHPTAI SQDSSSREPN MVASYTDQRS FGPAKDMRNE MLMHLMDGAH NAGADLIHND  120
THSSAQIEFG LLNNHNSMSV APAPGQGLSL SLNTHILAPS YPYWSAKTEL LTPHSYHGDD  180
NRMKNMQSEA SQAIRNSNSM SQTYQPSQLG ESKANIGMMS LGGAPAGFHN EGNQDDSFMN  240
LMLKDQRPGE AEGSLLHDAV AHHSDENARF MAYHLSGLGR YGNSNVSLTL GLQHPDNRLS  300
VQNTHQPGFA GAGEEIYNST ASLGVAAASS SDYESTNQID QRQRSSCRIE AAVWLPQAQG  360
LGSCIFFVRV NAPCCCHVGP GTMASLWVRL TMVASKQLHS QRCGGHYCQL HHHRLEEIAG  420
AGAESHRRDG SSGCGGAGPM VVLTLGSGAA AAEDDGGGRS RCCCGAGGAA PATMVSALRG  480
SRYLLPAQEL LREAVSAAAA SARGGDDDDE AVASFPHDGK STGIGGGGGV QAKLLSLLSE  540
LESRHEHYFG ELRRVSASFE PALGAGATAG YTALMAQAMS HHFGSLRRAI LRKLRLHAAA  600
AARTRSALLR LARDAMEEDD EGDGEEEEEV VNRVVRRTKQ AAAARAEQAW RPLRGLPEDA  660
VGVLRAWLFD HFLHPYPNDN EKLMLAVATG LSRTQISNWF INARVRLWKP MVEEMYNDEF  720
DDDDAGSGGG GASSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A4e-16656714563Homeobox protein Meis2
4xrm_B4e-16656714563Homeobox protein Meis2
5bng_A3e-16656714159Homeobox protein Meis2
5bng_B3e-16656714159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0607460.0AK060746.1 Oryza sativa Japonica Group cDNA clone:001-032-E12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0NZK60.0A0A0E0NZK6_ORYRU; Uncharacterized protein
STRINGORUFI03G30870.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.16e-34BEL1-like homeodomain 11