PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G30870.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 1022aa    MW: 111182 Da    PI: 6.4453
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G30870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.69.9e-094014381954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  ORUFI03G30870.1 401 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 438
                      664559******************************88 PP
2Homeobox23.21.2e-079609922254
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      ++yp+ +e+  LA  +gL+ +q+++WF N R +
  ORUFI03G30870.1 960 HPYPNDNEKLMLAVATGLSRTQISNWFINARVR 992
                      89*****************************88 PP
3BELL119.31.7e-38264335172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      e+qelq+k akL+ +l+eVd++Yk+y++q+q+v+ssF++vag g+akpYt++Al++iS+hFrcLkdai +qi
  ORUFI03G30870.1 264 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQIVVSSFDMVAGSGAAKPYTAVALQTISKHFRCLKDAINDQI 335
                      689*******************************************************************98 PP
4BELL56.19.2e-198188801072
             BELL  10 akLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      akLlsll e++ r+++y  +l+ v +sFe + g g+ + Yt+l  +a+S hF +L+ ai  ++
  ORUFI03G30870.1 818 AKLLSLLSELESRHEHYFGELRRVSASFEPALGAGATAGYTALMAQAMSHHFGSLRRAILRKL 880
                      8**********************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-56188333IPR006563POX domain
PfamPF075264.7E-51194331IPR006563POX domain
PROSITE profilePS5007112.357379442IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.2E-28381451IPR009057Homeodomain-like
SMARTSM003891.6E-9382446IPR001356Homeobox domain
CDDcd000861.32E-12382443No hitNo description
SuperFamilySSF466895.56E-17383448IPR009057Homeodomain-like
PfamPF059201.8E-17399438IPR008422Homeobox KN domain
SMARTSM005748.9E-16758878IPR006563POX domain
PfamPF075267.6E-20764876IPR006563POX domain
PROSITE profilePS5007111.175933996IPR001356Homeobox domain
CDDcd000862.72E-10936997No hitNo description
SMARTSM003895.4E-99361000IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-259411002IPR009057Homeodomain-like
SuperFamilySSF466892.95E-169421004IPR009057Homeodomain-like
PfamPF059201.9E-16953992IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1022 aa     Download sequence    Send to blast
MATYYSSPGN ERDSQAMYPA DSGNSSYPVP SAIGNMLYPG NGSSGPYTEF SGIIQHQQNF  60
MELPGHPTAI SQDSSSREPN MVASYTDQRS FGPAKDMRNE MLMHLMDGAH NAGADLIHND  120
THSSAQIEFG LLNNHNSMSV APAPGQGLSL SLNTHILAPS YPYWSAKTEL LTPHSYHGDD  180
NRMKNMQSEA SQAIRNSKYL KAAQELLDEV VSVWKSIKQK AQKDQAEAGK SDNKEAEGGS  240
KGEGVSSNPQ ESTANAAPEI SAAEKQELQN KMAKLMAMLD EVDRKYKHYY HQMQIVVSSF  300
DMVAGSGAAK PYTAVALQTI SKHFRCLKDA INDQINVIRK KLGEEESSSG KEGKLTRLRY  360
IDQQLRQQRA FQQYGLLQQN AWRPQRGLPE NSVSILRAWL FEHFLHPYPK DSEKLMLARQ  420
TGLTRSQISN WFINARVRLW KPMIEDMYKE EIGEADLDSN SSSDNVPRSK DKIATSEDKE  480
DLKSSMSQTY QPSQLGESKA NIGMMSLGGA PAGFHNEGNQ DDSFMNLMLK DQRPGEAEGS  540
LLHDAVAHHS DENARFMAYH LSGLGRYGNS NVSLTLGLQH PDNRLSVQNT HQPGFAGAGE  600
EIYNSTASLG VAAASSSDYE STNQIDQRQR SSCRIEAAVW LPQAQGLGSC IFFVRVNAPC  660
CCHVGPGTMA SLWVRLTMVA SKQLHSQRCG GHYCQLHHHR LEEIAGAGAE SHRRDGSSGC  720
GGAGPMVVLT LGSGAAAAED DGGGRSRCCC GAGGAAPATM VSALRGSRYL LPAQELLREA  780
VSAAAASARG GDDDDEAVAS FPHDGKSTGI GGGGGVQAKL LSLLSELESR HEHYFGELRR  840
VSASFEPALG AGATAGYTAL MAQAMSHHFG SLRRAILRKL RLHAAAAART RSALLRLARD  900
AMEEDDEGDG EEEEEVVNRV VRRTKQAAAA RAEQAWRPLR GLPEDAVGVL RAWLFDHFLH  960
PYPNDNEKLM LAVATGLSRT QISNWFINAR VRLWKPMVEE MYNDEFDDDD AGSGGGGASS  1020
SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-17388999158Homeobox protein Meis1
4xrs_B4e-17388999158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0679390.0AK067939.1 Oryza sativa Japonica Group cDNA clone:J013124I05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631000.10.0BEL1-like homeodomain protein 7
RefseqXP_025879417.10.0BEL1-like homeodomain protein 7
TrEMBLA0A0E0NZK50.0A0A0E0NZK5_ORYRU; Uncharacterized protein
STRINGORUFI03G30870.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-105BEL1-like homeodomain 6