PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G30180.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 308aa    MW: 32640.1 Da    PI: 5.0463
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G30180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.33.7e-15159204555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h   Er+RR++iN++f eL  ++Pk+     kK++Ka+iL  A  YI++Lq
  ORUFI03G30180.1 159 HVVDERKRREKINQRFMELSAVIPKL-----KKMDKATILSDAASYIRELQ 204
                      7778**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.948154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-18158215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-17158220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-12159204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-16160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-15163208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDDSSLFLQW AVSTLQHQHP AAVAVVADDD ATFFSFQELC DAEEVVVVPV QEEVITEAHG  60
GGASRIGLAV AVDEHGGWSR SPNPGARPPS GGCGSNNLPL MSWDFSAASV AVQVQPNGGG  120
GGGAPEMAYG SPPAAGGSTT RKTSAPTVAA AAAYAQLEHV VDERKRREKI NQRFMELSAV  180
IPKLKKMDKA TILSDAASYI RELQEKLKAL EEQAAARVTE AAMATPSPAR AMNHLPVPPE  240
IEVRCSPTNN VVMVRIHCEN GEGVIVRILA EVEEIHLRII NANVMPFLDQ GATMIITIAA  300
KASSSLLY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167ERKRRE
2163168RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880235.11e-154LOW QUALITY PROTEIN: transcription factor NAI1
TrEMBLA0A0E0NZD00.0A0A0E0NZD0_ORYRU; Uncharacterized protein
STRINGORUFI03G30180.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.29e-24bHLH family protein