PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G28180.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LSD
Protein Properties Length: 268aa    MW: 28515.4 Da    PI: 9.2589
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G28180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.62e-1389113125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      C+gCr +L+YP GApsV+CalC+++
  ORUFI03G28180.1  89 CHGCRSVLRYPSGAPSVCCALCQAI 113
                      ***********************97 PP
2zf-LSD138.91.4e-12130154125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      CggCrtlL+Y+r+A  VRC++C tV
  ORUFI03G28180.1 130 CGGCRTLLMYTRNADTVRCSCCSTV 154
                      ***********************99 PP
3zf-LSD148.21.8e-15168191124
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                      Cg+Crt+L+YP+GApsV+Ca+C+ 
  ORUFI03G28180.1 168 CGQCRTTLMYPYGAPSVKCAICHY 191
                      **********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.1E-1286116IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-989113IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.5E-14127157IPR005735Zinc finger, LSD1-type
PfamPF069432.9E-10130154IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.9E-12165193IPR005735Zinc finger, LSD1-type
PfamPF069432.1E-14168192IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MTSRAEPRLV VLLPNPTLLA IPPPRRRRRR EEPPPCCWCS VDRRAVGALP FPGATTTTTH  60
CRRGVGGLRC GGLVSFLLLL LLRRSQIVCH GCRSVLRYPS GAPSVCCALC QAITTVPPPA  120
PVMEMAHLIC GGCRTLLMYT RNADTVRCSC CSTVNLVRPV NNIAHVSCGQ CRTTLMYPYG  180
APSVKCAICH YITNTGMNTV APTPSPMPTS SGSSYNAPPS GSSYNAPPPT SAPTSRPQNV  240
TVVVENPMTV DEKGKLVSNV VVGVTTGK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12429RRRRRR
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115690.0AK111569.1 Oryza sativa Japonica Group cDNA clone:J013071E13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628086.11e-127protein LOL3
SwissprotQ6ASS21e-128LOL3_ORYSJ; Protein LOL3
TrEMBLA0A0D3FLM00.0A0A0D3FLM0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0NYP30.0A0A0E0NYP3_ORYRU; Uncharacterized protein
STRINGORUFI03G28180.10.0(Oryza rufipogon)
STRINGOBART03G27110.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.78e-54LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]