PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G28150.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 438aa    MW: 46489 Da    PI: 7.2864
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G28150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH536.1e-17322368455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  ORUFI03G28150.1 322 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 368
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-21316380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.97E-17321372No hitNo description
PfamPF000103.0E-14322368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-21322376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-18324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MNQFVPDWSN MGDASRTLGE DDNLIELLWC NGHVVMQSQN HHRKLPPRPP EKAAAAAVQE  60
DEAGLWFPFA LADSLEKDIF SDLFYEAPVA ATAEAAPAGP GAGADGEGKT CKGDAAMAEE  120
ERGGPGAASE APRELMPPPK STNASCSRQQ TMSLADGGDN AGDLSELVRA RRSSGGAARR  180
KAEAGGGGGG ASSSMLSAIG SSICGSNQVQ VQQRTASEPG RRGAPPSAVG SANAIPCGGR  240
DHGHGHEATT VASSSGRSNC CFGTTTTTEP TSTSNRSSKR KRLDTTEDSE SPSEDAESES  300
AALARKPPAK MTTARRSRAA EVHNLSERRR RDRINEKMRA LQELIPHCNK TDKASMLDEA  360
IEYLKSLQLQ LQMMWMGSGM APPVMFPGVH QYLPRMGVGM GAAAAAMPRM PEWGIIRWGP  420
RPCSSSKIHH FTIINKKE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326331ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0605050.0AK060505.1 Oryza sativa Japonica Group cDNA clone:001-018-H11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880141.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
TrEMBLA0A0E0NYN90.0A0A0E0NYN9_ORYRU; Uncharacterized protein
STRINGORUFI03G28150.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-33phytochrome interacting factor 3