PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI03G28070.3

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 735aa MW: 81012.9 Da PI: 7.1844

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI03G28070.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	29.1	2.1e-09	491	517	15	41
TCR 15 kkYCeCfaagkkCseeCkCedCkNkee 41 k YCeCfa++++Cse+C+C +C+N+++ ORUFI03G28070.3 491 KSYCECFASKVYCSESCSCRGCFNDHS 517 99**********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	12.363	483	567	IPR005172	CRC domain
SMART	SM01114	1.1E-4	484	518	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	6.3E-6	491	515	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence Send to blast
MGSETNKEGA RGGGQFEVVA TTCEVTIVVG CMKEMSAGQF YCKGEERVDG GAGIKRRGAP 60 QRKGDSPFLN FVKSLSPISS SQPLDAVPNL QMIKSSDLVH IPSIFTPPEE YFCKTLSRRL 120 VSLLSHDSNR KIKFIDRSLS QAYHDSPDNA SILPTNLAQR IQLSSDTLGS DKRHGIAGKT 180 DHETAQKHAK LSCFDQRCLD KMKQLTSGMN VQKRDLAKTH NDEITACDWD YLGTQYDSSV 240 VPESDLRFET AELLLETPKN GDAMPGKSFL PIVEANLENS RRKLFQGSAD CYSQSAVDNI 300 HAYCTSRGKE VATNHVSGIL PCPRESQLIP DHHFSDSLEV PSDYMAMNPS AVSQHLRGLH 360 RRSLFNDKVR DPTMGVQSVS NLGASTCATR HRSIPDDNYS KLVGSPVCAL PNVDLHLVRM 420 TEEMVPYNMT CTVNSTLSIS EHNTEISTVV PVNQLAPNTS EMNTHNQGDY SSQATMPTSA 480 GNSGQENPKR KSYCECFASK VYCSESCSCR GCFNDHSHEE TVLSTRNRIE SRNPLAFAPK 540 VIRTCGPGLE FGEDSNATPA SSRHKRGIER FETKEIERAD RKMKDHPKEE QSEMDKYHAL 600 CEIWGVRSTE NLFTTPSMDS RRAFALFPSE CPKSSLTSST RTSSHLHSPT RTDVLLSPFG 660 SYTQMLLGNE ASDMLLQQGD SSCTASLRIA SPNKKRVSPL RTGNTLSPTC RKELGLKSII 720 PPFPSLTGDA NSELQ

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence Send to blast

MGSETNKEGA RGGGQFEVVA TTCEVTIVVG CMKEMSAGQF YCKGEERVDG GAGIKRRGAP  60
QRKGDSPFLN FVKSLSPISS SQPLDAVPNL QMIKSSDLVH IPSIFTPPEE YFCKTLSRRL  120
VSLLSHDSNR KIKFIDRSLS QAYHDSPDNA SILPTNLAQR IQLSSDTLGS DKRHGIAGKT  180
DHETAQKHAK LSCFDQRCLD KMKQLTSGMN VQKRDLAKTH NDEITACDWD YLGTQYDSSV  240
VPESDLRFET AELLLETPKN GDAMPGKSFL PIVEANLENS RRKLFQGSAD CYSQSAVDNI  300
HAYCTSRGKE VATNHVSGIL PCPRESQLIP DHHFSDSLEV PSDYMAMNPS AVSQHLRGLH  360
RRSLFNDKVR DPTMGVQSVS NLGASTCATR HRSIPDDNYS KLVGSPVCAL PNVDLHLVRM  420
TEEMVPYNMT CTVNSTLSIS EHNTEISTVV PVNQLAPNTS EMNTHNQGDY SSQATMPTSA  480
GNSGQENPKR KSYCECFASK VYCSESCSCR GCFNDHSHEE TVLSTRNRIE SRNPLAFAPK  540
VIRTCGPGLE FGEDSNATPA SSRHKRGIER FETKEIERAD RKMKDHPKEE QSEMDKYHAL  600
CEIWGVRSTE NLFTTPSMDS RRAFALFPSE CPKSSLTSST RTSSHLHSPT RTDVLLSPFG  660
SYTQMLLGNE ASDMLLQQGD SSCTASLRIA SPNKKRVSPL RTGNTLSPTC RKELGLKSII  720
PPFPSLTGDA NSELQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC120505	0.0	AC120505.7 Oryza sativa chromosome 3 BAC OSJNBa0066H15 genomic sequence, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025879709.1	0.0	protein tesmin/TSO1-like CXC 2
TrEMBL	A0A0E0NYM8	0.0	A0A0E0NYM8_ORYRU; Uncharacterized protein
STRING	ORUFI03G28070.3	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14774	19	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	2e-30	TESMIN/TSO1-like CXC 2