PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G28070.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CPP | ||||||||
Protein Properties | Length: 705aa MW: 77752.3 Da PI: 7.3795 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 29.1 | 2e-09 | 461 | 487 | 15 | 41 |
TCR 15 kkYCeCfaagkkCseeCkCedCkNkee 41 k YCeCfa++++Cse+C+C +C+N+++ ORUFI03G28070.2 461 KSYCECFASKVYCSESCSCRGCFNDHS 487 99**********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 12.363 | 453 | 537 | IPR005172 | CRC domain |
SMART | SM01114 | 1.1E-4 | 454 | 488 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 6.0E-6 | 461 | 485 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 705 aa Download sequence Send to blast |
MGSETNKEGA RGGGQFEVVA TTCEVTIVVG CMKEMSAGQF YCKGEERVDG GAGIKRRGAP 60 QRKGDSPFLN FVKSLSPISS SQPLDAVPNL QMIKSSDLVH IPSIFTPPEE YFCKTLSRRL 120 VSLLSHDSNR KIKFIDRSLS QAYHDSPDNA SILPTNLAQR IQLSSDTLGS DKRHGIAGKT 180 DHETAQKHAK LSCFDQRCLD KMKQLTSGMN VQKRDLAKTH NDEITACDWD YLGTQYDSSV 240 VPESDLRFET AELLLETPKN GDAMPGKSFL PIVEANLENS RRKLFQGSAD CYSQSAVDNI 300 HAYCTSRGKE VATNHVSGIL PCPRESQLIP DHHFSDSLEV PSDYMAMNPS AVSQHLRGLH 360 RRSLFNDKVR DPTMGVQSVS NLGASTCATR HRSIPDDNYS KLVGSPVCAL PNVDLHLVRM 420 TEEMLAPNTS EMNTHNQGDY SSQATMPTSA GNSGQENPKR KSYCECFASK VYCSESCSCR 480 GCFNDHSHEE TVLSTRNRIE SRNPLAFAPK VIRTCGPGLE FGEDSNATPA SSRHKRGIER 540 FETKEIERAD RKMKDHPKEE QSEMDKYHAL CEIWGVRSTE NLFTTPSMDS RRAFALFPSE 600 CPKSSLTSST RTSSHLHSPT RTDVLLSPFG SYTQMLLGNE ASDMLLQQGD SSCTASLRIA 660 SPNKKRVSPL RTGNTLSPTC RKELGLKSII PPFPSLTGDA NSELQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC120505 | 0.0 | AC120505.7 Oryza sativa chromosome 3 BAC OSJNBa0066H15 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879709.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A0E0NYM7 | 0.0 | A0A0E0NYM7_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G28070.3 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 5e-26 | Tesmin/TSO1-like CXC domain-containing protein |