PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI03G27410.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 444aa MW: 46735.4 Da PI: 9.9771

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI03G27410.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	70.7	2.2e-22	115	159	2	46
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46 pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+h+ ORUFI03G27410.1 115 PRMRWTTALHAHFVQAVELLGGHERATPKSVLELMNVKDLTLAHM 159 9*****************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.49E-8	112	158	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.1E-19	112	159	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.3E-15	115	158	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MATTAATAPD LSLHISPPSP LDMAAGGETM EQLAEPKLCL GFGTAAAAAA EQYNNGGCNL 60 QQQQRLHQPS QIQRFKKSAS GGSPVCSGGA TGTGGVAAAR SGNGGGGGKR SSRAPRMRWT 120 TALHAHFVQA VELLGGHERA TPKSVLELMN VKDLTLAHMY RTVKGTTDRT CAEGHGQMRD 180 MGFLRRGGGG VDGFDVLGNT SSIAIANIRR QAAGSPGEHH QETMMSSAWC QPQFAQQQTT 240 ACGLPLPCPY IVSTHHYLIK QNQLGGWRGS SGQQLAVQQD AAAHSSLGIK NMGQQRLPAA 300 AAAAAGSHDD EIVVVASRIG RRSSGTAGFA RSSPPAASGC WTPTTTTWSP PPPLTPQTTS 360 TTTTMRGSSV VVAAAAQACM KQQQQQQTPS RVPSLEISLG RQGWQSGSSL EQQQQHQQRH 420 HQQQQRQRSV ESSASKELTL LKCL

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MATTAATAPD LSLHISPPSP LDMAAGGETM EQLAEPKLCL GFGTAAAAAA EQYNNGGCNL  60
QQQQRLHQPS QIQRFKKSAS GGSPVCSGGA TGTGGVAAAR SGNGGGGGKR SSRAPRMRWT  120
TALHAHFVQA VELLGGHERA TPKSVLELMN VKDLTLAHMY RTVKGTTDRT CAEGHGQMRD  180
MGFLRRGGGG VDGFDVLGNT SSIAIANIRR QAAGSPGEHH QETMMSSAWC QPQFAQQQTT  240
ACGLPLPCPY IVSTHHYLIK QNQLGGWRGS SGQQLAVQQD AAAHSSLGIK NMGQQRLPAA  300
AAAAAGSHDD EIVVVASRIG RRSSGTAGFA RSSPPAASGC WTPTTTTWSP PPPLTPQTTS  360
TTTTMRGSSV VVAAAAQACM KQQQQQQTPS RVPSLEISLG RQGWQSGSSL EQQQQHQQRH  420
HQQQQRQRSV ESSASKELTL LKCL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC092780	0.0	AC092780.6 Oryza sativa chromosome 3 BAC OSJNBb0079B16 genomic sequence, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629915.1	0.0	uncharacterized protein LOC9269134 isoform X2
TrEMBL	A0A0E0NYE6	0.0	A0A0E0NYE6_ORYRU; Uncharacterized protein
STRING	ORUFI03G27410.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3742	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	4e-25	G2-like family protein