PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G27290.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 173aa    MW: 19913.2 Da    PI: 10.2427
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G27290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.41.4e-14901721499
                      T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                      + + ++kk+a+ +       e+ t++l + +g+sW+v+++ +k+ ++ +l+ GW++F+ +n+L  gD+++F l ++ ++  + v+++r+
  ORUFI03G27290.1  90 CTVEISKKYADVYlpF----EDGTVVL-QHHGKSWNVRCCLTKQNSKRFLK-GWRQFAGDNKLHLGDICLFDLLKDkKKYVMDVHIIRR 172
                      5667888888777431....2225665.55*********996655554555.********************99887888888888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-2268172IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-2169172IPR015300DNA-binding pseudobarrel domain
CDDcd100171.47E-1774171No hitNo description
PROSITE profilePS5086312.05577173IPR003340B3 DNA binding domain
SMARTSM010192.4E-478173IPR003340B3 DNA binding domain
PfamPF023626.1E-1392172IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MSGRSYDIAM RNSQDEKKKR KQRDISRQGT VKPSEEGLKA ELVPGCILPS RTDLTRLQKN  60
ILIEKVKAIN SETPIYGYVM NNSSINGIPC TVEISKKYAD VYLPFEDGTV VLQHHGKSWN  120
VRCCLTKQNS KRFLKGWRQF AGDNKLHLGD ICLFDLLKDK KKYVMDVHII RRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0972801e-135AC097280.8 Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence.
GenBankAP0149591e-135AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-135CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629587.11e-124putative B3 domain-containing protein Os03g0621600
SwissprotQ851V11e-126Y3160_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0E0NYD21e-126A0A0E0NYD2_ORYRU; Uncharacterized protein
STRINGORUFI03G27290.11e-126(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.19e-12related to vernalization1 1