PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G27190.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 908aa    MW: 101943 Da    PI: 9.034
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G27190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.31.6e-14561351297
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      + + +++p +f++++ggk   + t++le+++g  + v++  + + ++++l+ GW+ Fv+a+++keg++++F+++++s+    v ++
  ORUFI03G27190.1  56 SMHSMIMPDRFVSHFGGK--IPGTIKLESPNGILYVVEV--TECMNKTLLQCGWEAFVDAHNIKEGESLLFRHIENSRY--EVLIL 135
                      456799******888888..5669***************..*******************************9986655..66665 PP
2B340.54.9e-132653471698
                      EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
               B3  16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                      lv++ ++a+ h   ++e+ t+tl+ +s  ++W  ++  r  ++ ++l++ W++Fv++n L+e D+++F  ++  ++f ++v++++
  ORUFI03G27190.1 265 LVISSRYASVHF--PRETATITLQRPSKrKKWYPRFYKRIDKSDHMLRGQWQNFVHDNCLQEEDICLFVPTKGgRNFAFTVHLLQ 347
                      799999999997..456779*****66659******66777777*************************8766589988888876 PP
3B348.41.7e-154635461698
                      EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      l l+ ++a+++   +k +++tl+l + +g  W+++l +     k++r +lt+GW++F+++n+L++gDf++F+l+++++ ++ v++++
  ORUFI03G27190.1 463 LELSSRYAASYlP-DK-NHQTLVL-QCKGMIWQINLVVrrrYTKGKRWFLTAGWRKFAHDNRLRVGDFCLFELKKKKKLTMEVHIIS 546
                      7788999999952.33.3346665.569*******97754433334478************************999*******9986 PP
4B354.42.4e-175866671097
                      HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      + + + +++p +f++++ggk   + t++le+++g  + v++  + + +++vl+ GW+ Fv+a+++k+gD+++F+++++s+f   v+++
  ORUFI03G27190.1 586 TDSMHSMIIPDRFVNHFGGK--IPGTIKLESPNGILYVVEV--TECMNKTVLQCGWEAFVDAHHIKVGDSLLFRHIENSCF--EVMIL 667
                      4455679*******888888..5669***************..**************************************..66665 PP
5B342.89.2e-148199021496
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                      ++l l  ++a++  ++ ++  + ++ ++ g++W+  +  + ksgr     +l +GW++Fv++n+L++gD+++++l+++ s+ +++v+ 
  ORUFI03G27190.1 819 CQLELGARYAAAVHLPDRR--QAVVLQRMGQRWDTVM--QTKSGRcttrRFLINGWSRFVRDNRLCVGDICLLELKKHeSKLTMTVHT 902
                      7777888888888777555..5899999*********..555555224445557**********************877888888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.26E-2042140IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.13945138IPR003340B3 DNA binding domain
CDDcd100173.62E-1646136No hitNo description
Gene3DG3DSA:2.40.330.109.9E-1746139IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-748138IPR003340B3 DNA binding domain
PfamPF023629.4E-1356134IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.4E-18242347IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-18242346IPR015300DNA-binding pseudobarrel domain
CDDcd100177.02E-18249344No hitNo description
SMARTSM010190.0011249349IPR003340B3 DNA binding domain
PROSITE profilePS5086310.292250349IPR003340B3 DNA binding domain
PfamPF023623.1E-11265347IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.8E-18438545IPR015300DNA-binding pseudobarrel domain
CDDcd100171.24E-14442546No hitNo description
PROSITE profilePS5086311.914448548IPR003340B3 DNA binding domain
SMARTSM010191.6E-9448548IPR003340B3 DNA binding domain
SuperFamilySSF1019362.49E-16459549IPR015300DNA-binding pseudobarrel domain
PfamPF023625.5E-13463546IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-23574672IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.7E-20577672IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.605577670IPR003340B3 DNA binding domain
CDDcd100175.79E-19579668No hitNo description
SMARTSM010191.0E-11580670IPR003340B3 DNA binding domain
PfamPF023627.3E-16586667IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-16795901IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-15796901IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-12801901No hitNo description
PROSITE profilePS508639.982806904IPR003340B3 DNA binding domain
SMARTSM010190.011811907IPR003340B3 DNA binding domain
PfamPF023623.1E-11819903IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    Send to blast
MGAPRRKSCS ALGASNGDAL GHRNTHRKKS CACCKEYLEH LGGKMRCFLR RMAADSMHSM  60
IMPDRFVSHF GGKIPGTIKL ESPNGILYVV EVTECMNKTL LQCGWEAFVD AHNIKEGESL  120
LFRHIENSRY EVLILDSDDC EKVFSCAGIR NGSCVQDKTV DPVDSSGSSS NDTTQSSRSR  180
NTENLTAMCS SSEKSGEDSP SGYEFHESVE PQTPSGSDYV LSRRTYLSEA QKERVVTHIQ  240
DIQPEITVFV AVMKKCNLQS PAPYLVISSR YASVHFPRET ATITLQRPSK RKKWYPRFYK  300
RIDKSDHMLR GQWQNFVHDN CLQEEDICLF VPTKGGRNFA FTVHLLQAEV THSRDGTDVH  360
KIGSSQNKRN SKMASQVHIK EAPGGDVSSE SNKHGVSHES LESEDSDGPS EPPYISSMRR  420
RLSQLQKKTV EEKVRAIQSE IPICVATISK LAGSGGKGKF RGLELSSRYA ASYLPDKNHQ  480
TLVLQCKGMI WQINLVVRRR YTKGKRWFLT AGWRKFAHDN RLRVGDFCLF ELKKKKKLTM  540
EVHIISNLQL HMAGGGSRMK KSCACCKRYL EHLGGKMSCF LIRMTTDSMH SMIIPDRFVN  600
HFGGKIPGTI KLESPNGILY VVEVTECMNK TVLQCGWEAF VDAHHIKVGD SLLFRHIENS  660
CFEVMILDSD GCERVFSCAG IKTSSCVHDK TVDPVDTSGR SSDDTAQPSR SERFARCQRD  720
TSNDRRNTAS LTAVSSSSEE SENVSLKSNR NGVSDESQES EDSEGPAGPP YILSWKSKSR  780
LSSLQKKIIK EKVRSIQSEV PIYVAIMNKS NIGLTSSPCQ LELGARYAAA VHLPDRRQAV  840
VLQRMGQRWD TVMQTKSGRC TTRRFLINGW SRFVRDNRLC VGDICLLELK KHESKLTMTV  900
HTIFSQQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1531537LKKKKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629380.10.0B3 domain-containing protein Os03g0619800
RefseqXP_015629381.10.0B3 domain-containing protein Os03g0619800
SwissprotQ6AV210.0Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBLA0A0E0NYB70.0A0A0E0NYB7_ORYRU; Uncharacterized protein
STRINGORUFI03G27190.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-12B3 family protein