PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G27150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 72aa MW: 7513.59 Da PI: 7.2875 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 40.4 | 6.2e-13 | 48 | 72 | 5 | 29 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqP 29 +cprC s++tkfCyynny++ P ORUFI03G27150.1 48 REQCPRCASHDTKFCYYNNYNTMFP 72 679******************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.2E-9 | 48 | 72 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-6 | 50 | 72 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 72 aa Download sequence Send to blast |
MPGQVMEAAL QQLPASMASG SLLLPPACLQ HPLPAAAAAS GGVGGSSREQ CPRCASHDTK 60 FCYYNNYNTM FP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC107206 | 1e-112 | AC107206.4 Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence. | |||
GenBank | AK119803 | 1e-112 | AK119803.1 Oryza sativa Japonica Group cDNA clone:002-176-F03, full insert sequence. | |||
GenBank | AP014959 | 1e-112 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-112 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880163.1 | 6e-32 | dof zinc finger protein MNB1A-like | ||||
TrEMBL | A0A0E0NYB3 | 3e-45 | A0A0E0NYB3_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G27150.1 | 6e-46 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26790.1 | 2e-07 | Dof family protein |