PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORUFI03G27090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 327aa MW: 34407.8 Da PI: 7.36 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 39.1 | 2.3e-12 | 3 | 126 | 3 | 126 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 G+ F+P d+el++++L++k+++++++l +i+++d+y++ P dL + + ++ +yfF++ ++ g ++r ORUFI03G27090.1 3 GGLTFSPPDHELITKFLRPKIADDTIKL-PFIHDADVYSAAPPDLAArhvpargtdRGDGAGAVYYFFCPVHRGGG-GVGARRR---------- 84 699************************9.88**************8445666543222223335589998877644.3333332.......... PP NAM 88 kdkevlskkgelvglkktLvfy...kgrapkgektdWvmhey 126 + +vl+++g+ vg + L + +g+ ++ ++ W+m e+ ORUFI03G27090.1 85 QRAAVLDAGGRRVGHLRRLSYGvreRGSGRRLTRLGWCMTEF 126 345566667777777777777655456666666777777777 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 18.138 | 1 | 151 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.2E-23 | 3 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-7 | 4 | 127 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 327 aa Download sequence Send to blast |
MAGGLTFSPP DHELITKFLR PKIADDTIKL PFIHDADVYS AAPPDLAARH VPARGTDRGD 60 GAGAVYYFFC PVHRGGGGVG ARRRQRAAVL DAGGRRVGHL RRLSYGVRER GSGRRLTRLG 120 WCMTEFGVDH GGGGGGEADA GGLVLCKMYR SPRAAQVEAR LQAAAASTSG SKRKQAADDL 180 IHAPASSRHR HADVMPAGVN GDEVGSIHPS VQFPPPPEEQ TLVQTRDGPR TDHEVIMALA 240 MGATVDELLG PKHGEPGESS PFPAPAAEPC SISGGGDIFW TASGVVPCPD MAMAFPAPPA 300 GEFSWDKELA WIRELLSGSR PSSCSAV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC107206 | 0.0 | AC107206.4 Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0NYA7 | 0.0 | A0A0E0NYA7_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G27090.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4363 | 21 | 58 |