PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G25240.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 481aa    MW: 51980.4 Da    PI: 3.9742
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G25240.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.56.1e-2471481128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..dke 91 
                      lppG+rF+P+d+elv++yL +++++k+l+l+ vi ++d ++v Pw+   + +++ +e +fF+ ++ k+ +gkr++r +   g+W  +    d e
  ORUFI03G25240.2   7 LPPGLRFDPSDDELVSRYLLRRIQQKPLPLDGVIVDADPLSVPPWTPL-ADHTRGDEAFFFAGARAKNGKGKRQKRtVEGGGFWLGQRMavDGE 99 
                      79****************************999************953.33456789*******************555599**8555422222 PP

              NAM  92 vlsk........kgel..........vglkktLvfykgrapkgektdWvmheyrl 128
                                  +  +          ++ k +L f+  + ++g ++ Wvmhey++
  ORUFI03G25240.2 100 R--LvvpgdgggG--VdgsggggleiTWRKYVLSFFA-EGEQG-SSGWVMHEYAV 148
                      2..1224566550..15555666666999999****3.44443.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-304166IPR003441NAC domain
PROSITE profilePS5100527.3567167IPR003441NAC domain
PfamPF023652.2E-158147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006629Biological Processlipid metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008374Molecular FunctionO-acyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MAGADGLPPG LRFDPSDDEL VSRYLLRRIQ QKPLPLDGVI VDADPLSVPP WTPLADHTRG  60
DEAFFFAGAR AKNGKGKRQK RTVEGGGFWL GQRMAVDGER LVVPGDGGGG VDGSGGGGLE  120
ITWRKYVLSF FAEGEQGSSG WVMHEYAVTS SADLASSPLR LYRVQKRKRE PQCLDSHDDE  180
DGGDQERAAP RRGVALPAAD GTDQGSYGVI DGEPSLVSHC LPDQIVPPAE EADATAGAVD  240
EERWSPPQPA SPTAALVKQN SYDLMVISSL LFSDLPDRID DDDLSVSQTE GTELSEQGSS  300
GVIDDDYWRE ADATGGAERE EIALLDEERC PQPQPAPPTD ALVPPLQGQT SYDVMADSSL  360
LFADLPGRID DDELQRSLRV SDMPDLFLSQ TEEAGAGGGG GAAPVLNKQS NSSPLGVMDS  420
EVPIVLSDLE FPESIDEVLS YIDFATDDCL DFDMDELFIN INMNVENARM TYIMKRREYQ  480
I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1355020.0AC135502.4 Oryza sativa chromosome 3 BAC OSJNBb0085A04 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630217.10.0NAC domain-containing protein 82
TrEMBLA0A0E0NXP60.0A0A0E0NXP6_ORYRU; Uncharacterized protein
STRINGORUFI03G25240.20.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.29e-13NAC domain containing protein 41