PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G25110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 374aa MW: 37028.2 Da PI: 8.5769 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.4 | 3.7e-39 | 44 | 104 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+ l+cprCds ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnvPvGgg+rknk+s+ ORUFI03G25110.1 44 QEQGLRCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRKNKRSR 104 57889*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 8.0E-33 | 46 | 102 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-24 | 47 | 97 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.609 | 48 | 102 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 50 | 86 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MAPAAGDDAV VPRKGAGGGG TTTPPPPPPA QQQQQQPLPP PPPQEQGLRC PRCDSPNTKF 60 CYYNNYSLSQ PRHFCKTCRR YWTKGGALRN VPVGGGCRKN KRSRSAAAAS RLSLNLPTVE 120 GIGGAAADPA AAAAARLGFL GGGTTMMMSS STSPLGGAAA AVADFQQGGA VGMLPLPRLQ 180 SPAGGGVGHH QYVPFGEWPS GDIAGGNAVN GGGGHGAVSS TIASSIESLS FINQDLHWKL 240 QQQRLATMFL SPPGSASAAA SAAQANDGGG NGAQATASGH AAGGGGGAFM HMAGSVPSME 300 AAMPSATSWF MDSCSYGLPS PPPPATAAVA ATTSSNLNSG GRSSGGGGGD DNATSNCGSA 360 IPAWGDISTF AMLP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 339 | 347 | GGRSSGGGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630014.1 | 1e-162 | dof zinc finger protein DOF5.7 | ||||
TrEMBL | A0A0E0NXM8 | 0.0 | A0A0E0NXM8_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G25110.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 3e-30 | DOF zinc finger protein 1 |