PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G22750.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 418aa    MW: 44425 Da    PI: 6.7509
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G22750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00071356378123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+C+k F +   L  H r+H
  ORUFI03G22750.1 356 FVCPICSKEFGSGQALGGHKRSH 378
                      89**************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.4E-51739IPR007087Zinc finger, C2H2
SMARTSM003550.161739IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-41740IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.03E-81739No hitNo description
PROSITE profilePS5015710.5331740IPR007087Zinc finger, C2H2
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
SuperFamilySSF576677.03E-8275302No hitNo description
PfamPF139121.2E-8279304IPR007087Zinc finger, C2H2
SMARTSM003551.5280302IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.138280307IPR007087Zinc finger, C2H2
PROSITE patternPS000280282302IPR007087Zinc finger, C2H2
PfamPF139128.0E-12356379IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.18356379IPR007087Zinc finger, C2H2
SMARTSM003550.048356378IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280358378IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MDDDDVVVLS SASATRHSCK VCGKGFACGR SLGGHMRSHS LTEVDAVAAA VAPAYERADD  60
DEGGDGKTVR RWMQSGGGYG LRENPKKTRR LSAGSGGGGG GGDNDDGDAC HHRGGDLLSS  120
SSCRPVLGRV RSHAPPAGGA AYADDSEDVG VDVDGGGGDD RYRDREMLVM AAPRRRPRSM  180
RVPAPVRDEF VVDEEPEDVA LCLVMLSRDT GRPWNSRPSD EYSSLMYNSS YHHHHHDAVS  240
DDDLELSLSS PYADTEIRTK KRRKTTGAAS TAGGEKRGRY ECHGCGRAFL SYQALGGHRA  300
SHKRINSNCS LVKPPADQPE PSIETSFSSA STSVSPADTM ISAATISKTV KKATKFVCPI  360
CSKEFGSGQA LGGHKRSHSI AGELYERGHA DGIVKLEQPL LADRFLDLNL PAPGGDDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172178PRRRPRS
2259263KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1379990.0AC137999.2 Oryza sativa chromosome 3 BAC OSJNBa0020H02 genomic sequence, complete sequence.
GenBankAK1055830.0AK105583.1 Oryza sativa Japonica Group cDNA clone:001-128-E09, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630118.10.0uncharacterized protein LOC4333158
TrEMBLA0A0E0NWS90.0A0A0E0NWS9_ORYRU; Uncharacterized protein
STRINGORUFI03G22750.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.16e-20C2H2-like zinc finger protein