PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G16590.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 702aa    MW: 74720 Da    PI: 6.8067
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G16590.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-07227247526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C ++ar G+Ck G++C+F Hg
  ORUFI03G16590.2 227 PCLYYAR-GFCKNGSTCRFVHG 247
                      8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.3222249IPR000571Zinc finger, CCCH-type
SMARTSM003560.004224248IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4226247IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-5227247IPR000571Zinc finger, CCCH-type
CDDcd124582.77E-32355462No hitNo description
SuperFamilySSF549281.84E-8412480IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3301.1E-5412469IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MDAYEATKVA LDPDHAAKIM GLLLIQDHGD KEMIRLAFGP EALLHSVMAQ ARKELALLPP  60
PQAASSSPTV PAAHSPFLLS RQNSGRCPAP SPSSWAQAQP FSRSNSMGNG GAADEMVGAG  120
EELMSPLNGG GGAAANAPPF FPRGGDALLD DFELQEQLAF LHDGAGGVNP GHALQAFDGA  180
ECRSPGPGES GGMLPYGLAW ANGGPGHRRS ASVNELCLGG DGFGWKPCLY YARGFCKNGS  240
TCRFVHGGLS DDAAMDAATA EQQQCQDFLI RSKSQRLGPA AFPFTPTGSL PASPSATSKC  300
LSLLLQQQQQ HNDNQRAAAA ALMLAGGDEA HKFMGRPRLD RVDFASMMNP GSRQIYLTFP  360
ADSTFREEDV SNYFRYIMRC CNDASSFFHG GLGRTRSDWH FCIAVLGNAP RCSIYGPVHD  420
VRIPYQQKRM FGFVTFVYPE TVKLILAKGN PHFICDARVL VKPYKEKGKV PDKYRKQQQG  480
DFCCMSPTGL DARDPFDFHQ LGARMLQHSN SANELMLRRK LEEQQQAAEL QQAIDLHSRR  540
LIGLQLLDLK SSAAVHAAET TTMSLPTPIT NAFTSGQPGA TTIVESPPSS TGQLMASCGS  600
PSEGKVVNGG NKADSAGEVT RNADSDQSGE HNLPDSPFAS STKSTAFSTA TAATAIGSEG  660
DFTTGSSCNI GGSAVGGANP LRPPTLDIPS PRTCFFPMPR NT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029180.0AK102918.1 Oryza sativa Japonica Group cDNA clone:J033114B10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632787.10.0zinc finger CCCH domain-containing protein 23
SwissprotQ10LZ90.0C3H23_ORYSJ; Zinc finger CCCH domain-containing protein 23
TrEMBLA0A0E0NUI40.0A0A0E0NUI4_ORYRU; Uncharacterized protein
STRINGORUFI03G16590.20.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14331115
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]