PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G14360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 214aa MW: 23714 Da PI: 10.3133 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 28.9 | 3.1e-09 | 20 | 102 | 2 | 84 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 W++ e+ aLi+a + + +rg l +++W++ ++++ + r +r+ qC+ + + l+ ryk++ + s +++f++ ORUFI03G14360.1 20 WSDGETAALIDAWGPPHVARSRGPLPAKDWRAAASAVnarraaAGRRHNRTRAQCRARVQTLKERYKRELAKPPP------SGWRHFSR 102 ***************************************999888889*******************98665553......24555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.4E-16 | 18 | 105 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MSSSKPSPQQ HQQQRANEWW SDGETAALID AWGPPHVARS RGPLPAKDWR AAASAVNARR 60 AAAGRRHNRT RAQCRARVQT LKERYKRELA KPPPSGWRHF SRLQEFLLAG PPPGFPPKTM 120 PPASVKKEEE EECQDEAVGG GGGSGGLLGR WVVPTRPRNG AAAWCPVGVV VTKLAEVYER 180 VELARLEVEK EKVAMEMEKA MQEAVKLKEE KLDT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137072 | 0.0 | AC137072.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045E22, from chromosome 3, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880270.1 | 1e-153 | uncharacterized protein LOC4332524 | ||||
TrEMBL | A0A0E0NTR2 | 1e-152 | A0A0E0NTR2_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q10MV1 | 1e-152 | Q10MV1_ORYSJ; Os03g0294300 protein | ||||
STRING | ORUFI03G14360.1 | 1e-153 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14753 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05550.2 | 1e-07 | sequence-specific DNA binding transcription factors |