PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI03G11650.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 410aa MW: 43242.4 Da PI: 5.4918

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI03G11650.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.2	1.5e-13	202	248	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L ++++++k+L ORUFI03G11650.1 202 KSHSEAERRRRERINAHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 248 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.022	199	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-11	202	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-15	203	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-15	203	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-13	205	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.18E-5	212	251	No hit	No description
Gene3D	G3DSA:3.30.70.260	9.1E-5	286	336	No hit	No description
CDD	cd04873	4.65E-6	286	332	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MGAHGDHRHH HHHQEAGVLV DEEEEEEVIE QACGGPTSGV VEQEVGGDGG GVCQDAAGMV 60 FEATSSVGSV SATMGPPPIM CWPPPAQPVH GAIHHHHNLG GGGGQQSPFF PLLPPLPPQP 120 PPPPPFFADF YARRALQYAY DHSGGASSSS DPLGLGGLYM GHHGSHVAGM MMPPPFAPSP 180 FGDLGRMTAQ EIMDAKALAA SKSHSEAERR RRERINAHLA RLRSLLPNTT KTDKASLLAE 240 VIQHVKELKR QTSEITEEAC PLPTESDELT VDASSDEDGR LVVRASLCCD DRTDLLPDLI 300 RALKALRLRA LKAEITTLGG RVKNVLVVTG DDSAAAAACA GTDGDGEQQE EAMQAPMSPQ 360 HTVASIQDAL RAVMERTASA TEESGGSGAG GGLKRQRTTS LSAILENRSI

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MGAHGDHRHH HHHQEAGVLV DEEEEEEVIE QACGGPTSGV VEQEVGGDGG GVCQDAAGMV  60
FEATSSVGSV SATMGPPPIM CWPPPAQPVH GAIHHHHNLG GGGGQQSPFF PLLPPLPPQP  120
PPPPPFFADF YARRALQYAY DHSGGASSSS DPLGLGGLYM GHHGSHVAGM MMPPPFAPSP  180
FGDLGRMTAQ EIMDAKALAA SKSHSEAERR RRERINAHLA RLRSLLPNTT KTDKASLLAE  240
VIQHVKELKR QTSEITEEAC PLPTESDELT VDASSDEDGR LVVRASLCCD DRTDLLPDLI  300
RALKALRLRA LKAEITTLGG RVKNVLVVTG DDSAAAAACA GTDGDGEQQE EAMQAPMSPQ  360
HTVASIQDAL RAVMERTASA TEESGGSGAG GGLKRQRTTS LSAILENRSI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	212	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK106649	0.0	AK106649.1 Oryza sativa Japonica Group cDNA clone:002-113-F07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006649780.1	0.0	PREDICTED: transcription factor bHLH30-like
Swissprot	Q9S7Y1	5e-75	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A0E0NSR3	0.0	A0A0E0NSR3_ORYRU; Uncharacterized protein
STRING	ORUFI03G11650.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1918	38	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	4e-54	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]