PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G11000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YC | ||||||||
Protein Properties | Length: 457aa MW: 48271.1 Da PI: 6.5086 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 167.9 | 1.3e-52 | 256 | 361 | 1 | 101 |
NF-YC 1 qlksfwekq.....iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 ql++fw++q + +a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+++d+aaa++rtd+f ORUFI03G11000.1 256 QLQAFWAYQrqeaeRASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAIARTDVF 349 89*****997665555689*************************************************************************** PP NF-YC 90 dflvdivprdel 101 dflvdivpr+e ORUFI03G11000.1 350 DFLVDIVPREEA 361 *********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.53E-31 | 244 | 352 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.4E-36 | 272 | 343 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.7E-20 | 280 | 343 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0048586 | Biological Process | regulation of long-day photoperiodism, flowering | ||||
GO:0051247 | Biological Process | positive regulation of protein metabolic process | ||||
GO:2000905 | Biological Process | negative regulation of starch metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MRSTGAGGGG GGVTGEVAGS GGGGEEVRRP ASPPNDDDEE RAAACLPASF LFVCSRCGSC 60 GGRRRSGCRP HSSSAPHQVA AECVVARHIR TGEPVDNEDG RLEYRGDNWR ALWPGSGKPG 120 LWMSAMSRLA AVYRLFTTDE EIHELTGERS VVKTKDAELE LVIPPVFVRC NKLNCSKKAR 180 TPVESGDGHF VQALGSGHST HSYKSTVIKV TMDNQQLPYA GQPAAAGAGA PVPGVPGAGG 240 PPAVPHHHLL QQQQAQLQAF WAYQRQEAER ASASDFKNHQ LPLARIKKIM KADEDVRMIS 300 AEAPVLFAKA CELFILELTI RSWLHAEENK RRTLQRNDVA AAIARTDVFD FLVDIVPREE 360 AKEEPGSALG FAAGGPAGAV GAAGPAAGLP YYYPPMGQPA PMMPAWHVPA WDPAWQQGAA 420 PDVDQGAAGS FSEEGQQGFA GHGGAAASFP PAPPSSE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 6e-49 | 264 | 358 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 330 | 336 | RRTLQRN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases at the end of the dark period, peaks in the beginning of the light period and gradually decreases during daytime. {ECO:0000269|PubMed:26542958}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134235 | 0.0 | AC134235.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0030J04, complete sequence. | |||
GenBank | AC134240 | 0.0 | AC134240.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0081I10, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628319.1 | 1e-174 | nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_015628320.1 | 1e-174 | nuclear transcription factor Y subunit C-2 | ||||
Swissprot | A6BLW4 | 1e-175 | NFYC2_ORYSJ; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A0E0NSI4 | 0.0 | A0A0E0NSI4_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G11000.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7345 | 35 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 2e-60 | nuclear factor Y, subunit C4 |
Publications ? help Back to Top | |||
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