PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORUFI03G10270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 117aa MW: 12606.3 Da PI: 11.6857 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 44.1 | 4.4e-14 | 81 | 113 | 1 | 33 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktil 33 k+r++W+peLH+rFv +++L G++ AtPk+i+ ORUFI03G10270.1 81 KARRCWSPELHRRFVATLQRLDGPQAATPKQIR 113 68*****************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-10 | 79 | 113 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-10 | 81 | 114 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 117 aa Download sequence Send to blast |
MSISNHHVSN AFMPLATSPV FAKSPEKAAT ATPLPAAVPD LSLSSPACPA APASVTSSAV 60 TDVARVQRRR QQQQQQAVQR KARRCWSPEL HRRFVATLQR LDGPQAATPK QIRADEG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC136136 | 1e-177 | AC136136.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0071C04, from chromosome 3, complete sequence. | |||
GenBank | AP014959 | 1e-177 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618787.1 | 2e-35 | transcription factor HHO6 | ||||
Refseq | XP_025879396.1 | 2e-36 | LOW QUALITY PROTEIN: transcription factor HHO2-like | ||||
TrEMBL | A0A0E0NS90 | 2e-77 | A0A0E0NS90_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G10270.1 | 4e-78 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5582 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G49560.1 | 1e-10 | G2-like family protein |