PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G08860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 886aa MW: 99173.8 Da PI: 5.0466 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 61.2 | 3.3e-19 | 69 | 198 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lp+G++F+Ptd++l+ +L+++v + + + +e+ik+vd +++P+d+p ++++ yfF+k+ k+ a++ +++ ++ W+ ORUFI03G08860.1 69 LPRGVEFNPTDSDLL-WHLAAEVGNGQarrhpfI--NEFIKSVDetigFGYTHPQDIP-GIRQDGCASYFFHKNFKECANE--NSKCIR---WQ 153 699************.789999988886776442..233554443333899*******.666777789******9999864..444445...** PP NAM 85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++g+ +++ +g+l g+k+++v+y + + ++++ tdW +h+y++ ORUFI03G08860.1 154 KSGNPISITL-DGNLQGCKEVFVLYayETDGNNPQITDWRLHQYHI 198 **********.999**********97767888889*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-25 | 61 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 21.775 | 69 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-8 | 70 | 198 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 886 aa Download sequence Send to blast |
MAKDKEVGPP PPPCVDSDHE DLPLAERRRR LLRPPAESKP PAPERREASA AAAAAEDSGG 60 AAQQGWPGLP RGVEFNPTDS DLLWHLAAEV GNGQARRHPF INEFIKSVDE TIGFGYTHPQ 120 DIPGIRQDGC ASYFFHKNFK ECANENSKCI RWQKSGNPIS ITLDGNLQGC KEVFVLYAYE 180 TDGNNPQITD WRLHQYHIES TEKDEGELVV SKIFYELEKN QFKWAEKSHA QSAQGASAID 240 DDSKEELQLD NHSFNMITEN SSVQGNENKQ KQTQTGTCPN LDKLSYFNVV SNMHIGNQIN 300 DHDEIEELDH MSLQERYRIL MAENHSSSAV VSSEQCAIDG LENSCKPGTN GMIPKRIHEG 360 TAFRDGMYSM LQEISSAPAI IGSIDNDNNR RLLTEGLSNN QQSHEAGCES GFLSTSSSAA 420 PPQCQVVCSH DLLVNGKTLI YSRDPSSSST PTFGDKNIQL EGTDDRTLLV DIKLEPALEG 480 DFTEKITSSV QRTDPNHGTE GSNLVGSINS VSSAISKRIS EAARSNPENS HVEGLLPSSR 540 IKSEVTGSEL PLVVCGLTSI SIAELTAKKT NTLNHDGVLA YCSRKRKRRK TLRDPSEKTL 600 EEDSLRNDEG TAYFSRQRRR RKTATDSIET ALEEDAPGLL QILLDKGILV KEIKLYGVEE 660 EDDMVPDCTE SDFQDLENVI TKLFPQRTSL LKSALRHEKG EKAIYCLTCL ISLIEQSRYL 720 QFRDCPVEWG WCRDLQSFIF IFKSHNRIVL ERPEYGYATY FFEIVKSLPI QWQIQRMVTA 780 MKLSGCGRTA LIENRPLLIG EDLTEGEARV LEEYGWVPNS GLGTMLNYRD RVVHDRWNER 840 SGTDWKTKIG KLLMNGYSEG HLVLSHFPTK VGKIEDDTEI KQEDPL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 583 | 588 | RKRKRR |
2 | 583 | 589 | RKRKRRK |
3 | 584 | 589 | KRKRRK |
4 | 605 | 618 | RNDEGTAYFSRQRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105283 | 0.0 | AK105283.1 Oryza sativa Japonica Group cDNA clone:001-116-E01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632079.1 | 0.0 | uncharacterized protein LOC4332096 | ||||
TrEMBL | A0A0E0NRR1 | 0.0 | A0A0E0NRR1_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q8H824 | 0.0 | Q8H824_ORYSJ; No apical meristem protein, expressed | ||||
STRING | ORUFI03G08860.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7479 | 32 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14490.1 | 9e-40 | NAC domain containing protein 85 |