PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORUFI03G06680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 544aa MW: 60701.2 Da PI: 6.3432 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 418.5 | 5.7e-128 | 167 | 535 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 ++++ +c +av++++ + l+++l++++s +g+pmqRl ay++e+L arl+++++ lyk+l+++e + s e +++++l++e++P++kf++ ORUFI03G06680.1 167 KQVIAACGKAVDENS-WYRDLLISELRNMVSISGEPMQRLGAYMLEGLVARLSSTGHALYKSLKCKEPT---SFELMSYMHLLYEICPFFKFGY 256 677888999998854.4568899*********************************************9...99999***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 + aN aI eav+ge+ vHiiDf+i qG QW++++qaLa+Rp+gpp lRiTg+++++s + l +g+rL ++A+++g+pfefn+ v + + ORUFI03G06680.1 257 MSANGAIAEAVKGENFVHIIDFQIAQGSQWATMIQALAARPGGPPYLRITGIDDSNSAhaRGGGLDIVGRRLFNIAQSCGLPFEFNA-VPAASH 349 ******************************************************8888889999***********************.799999 PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 ++ le+L++++gE+++Vn+++qlh+++desv +e++rd++L++vk+lsP+vv++veqea++n+++F++r le+l+yy+a+f+++++ pr++++ ORUFI03G06680.1 350 EVMLEHLDIRSGEVIVVNFAYQLHHTPDESVGIENHRDRILRMVKGLSPRVVTLVEQEANTNTAPFFNRYLETLDYYTAMFEAIDVACPRDDKK 443 999******************************************************************************************* PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ri+ E+++++r+ivn++acegaer+erhe ++kWr+rl++aGF+p+pls +++++k ll ++s y++ee++g+l+lgWk+r+Lv+ SaWr ORUFI03G06680.1 444 RISTEQHCVARDIVNLIACEGAERVERHEPFGKWRARLSMAGFRPYPLSALVNNTIKKLLDSYHSY-YKLEERDGALYLGWKNRKLVVSSAWR 535 ****************************************************************66.*************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.845 | 140 | 516 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.0E-125 | 167 | 535 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 544 aa Download sequence Send to blast |
MSMKASNRPY RYPDNSQIPY YSRSSMHVGQ NGTYHVQQNH EDLYASSDDG SQNGNSKAQG 60 LQAQYCTLDS SSGNFVYPAH SSTSSHISGS PISQQDSHSE HTSGSPASAS CVTEVPGLRF 120 TTIEEIENAM FGPEPDTVSS DCSLLTDSAF YQDNWREHLG INTGDLKQVI AACGKAVDEN 180 SWYRDLLISE LRNMVSISGE PMQRLGAYML EGLVARLSST GHALYKSLKC KEPTSFELMS 240 YMHLLYEICP FFKFGYMSAN GAIAEAVKGE NFVHIIDFQI AQGSQWATMI QALAARPGGP 300 PYLRITGIDD SNSAHARGGG LDIVGRRLFN IAQSCGLPFE FNAVPAASHE VMLEHLDIRS 360 GEVIVVNFAY QLHHTPDESV GIENHRDRIL RMVKGLSPRV VTLVEQEANT NTAPFFNRYL 420 ETLDYYTAMF EAIDVACPRD DKKRISTEQH CVARDIVNLI ACEGAERVER HEPFGKWRAR 480 LSMAGFRPYP LSALVNNTIK KLLDSYHSYY KLEERDGALY LGWKNRKLVV SSAWRFFRGF 540 LVDA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-58 | 163 | 535 | 1 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC116604 | 0.0 | AC116604.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0019D17, from chromosome 3, complete sequence. | |||
GenBank | AC150751 | 0.0 | AC150751.1 Oryza sativa Japonica Group chromosome 3 clone OSJNOa0279P04, complete sequence. | |||
GenBank | AK073386 | 0.0 | AK073386.1 Oryza sativa Japonica Group cDNA clone:J033041E22, full insert sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630858.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_015630859.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_015630860.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_015630861.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_015630862.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_015630863.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_025879855.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q8GVE1 | 0.0 | CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2 | ||||
TrEMBL | A0A0E0NQW5 | 0.0 | A0A0E0NQW5_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G06680.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1513 | 37 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|