PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G06570.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 298aa    MW: 31785.8 Da    PI: 6.5094
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G06570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.5e-21112162256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ +l+ge
  ORUFI03G06570.1 112 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDSAAFRLRGE 162
                      59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.95E-35111171No hitNo description
Gene3DG3DSA:3.30.730.105.2E-33112170IPR001471AP2/ERF domain
PROSITE profilePS5103223.696112169IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-23112170IPR016177DNA-binding domain
SMARTSM003806.1E-39112175IPR001471AP2/ERF domain
PRINTSPR003672.6E-11113124IPR001471AP2/ERF domain
PfamPF008476.7E-15113162IPR001471AP2/ERF domain
PRINTSPR003672.6E-11135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MATTVDWCGR GSNLPAAMYD MVVDSKELMG ALAPSMVSFS YPCSEQSASS LLAGANYLTP  60
AQVLHVQAQL QRLRRPGAGP GAPPLPMKRH GAVAVAAAAA AAAAAARAPV KLYRGVRQRH  120
WGKWVAEIRL PRNRTRLWLG TFDTAEEAAL AYDSAAFRLR GESARLNFPE LRRGGAHLGP  180
PLHAAVDAKL HAICHGMDLP QPQPQTQSNA TTTTMSTTAT NTPSPFFSSE SPVVKSEPVC  240
SASESSSSAD GDVSSTGSSD VVPEMQLLDF SEAPWDESES FLLHKYPSLE IDWDAILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20108169163ATERF1
3gcc_A1e-20108169163ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8419490.0CT841949.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629130.10.0ethylene-responsive transcription factor RAP2-13
TrEMBLA0A0E0NQV40.0A0A0E0NQV4_ORYRU; Uncharacterized protein
STRINGORUFI03G06570.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-37related to AP2 4