PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G06370.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 330aa    MW: 35261.7 Da    PI: 6.0615
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G06370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.72.7e-15110161155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P +   +s++ + a+i+  A++Y+k+L+
  ORUFI03G06370.1 110 QRMTHIAVERNRRRQMNEYLAVLRSLMPAS---YSQRGDQASIVGGAINYVKELE 161
                      79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.90E-15108165No hitNo description
PROSITE profilePS5088815.967109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-17110175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-14110165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-12110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-12115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MALEAVVFPQ GHFGYGCGRD SPAYGMPWCD VLAAAGGGGG GFGEFYGVDE WDDQLQVASV  60
DEWEVASKDN SDASTEGKAA AAERAAPVAA GRRKRRRTKV VKNKEEIECQ RMTHIAVERN  120
RRRQMNEYLA VLRSLMPASY SQRGDQASIV GGAINYVKEL EQLLQSLEVQ KSLKNRSGAM  180
DAAGDSPFAG FFSFPQYSTS PRTGCSAAAS AGSSGSASSV VMDDTAGSAE SGRQSAAIAD  240
IEVTMVEGHA SLKVLARRRP KQLLKLVVGL QQLRIPPLHL NVTTVDAMVL YSFSLKVEDD  300
SKLGSVEDIA TAVHQILGSI QQQEAVLSIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19296RKRRR
29297RKRRRT
3110121RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1075550.0AK107555.1 Oryza sativa Japonica Group cDNA clone:002-130-B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629273.10.0transcription factor bHLH96
SwissprotQ9C7T43e-83BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0E0NQT10.0A0A0E0NQT1_ORYRU; Uncharacterized protein
STRINGORUFI03G06370.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-59bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]