PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G04510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 131aa MW: 14305.3 Da PI: 8.6491 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.1 | 2.3e-11 | 52 | 128 | 18 | 95 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 ++ ++++++ g++ + ++ + + +s++++l ++++++ +lt+GW++ +a+ +egD+++F++++ + l+v+ ORUFI03G04510.1 52 FSERYINKYIGSP-IDDLMVSMAGTTQSYQMRL--KRSKDSsAMLTTGWNQLIDAKAFDEGDVCLFHFKEVdDVLVLKVH 128 4444444443333.3333444456779999999..55555459************************9876566655555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.1E-10 | 41 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.6E-9 | 50 | 126 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.31E-8 | 50 | 131 | No hit | No description |
SuperFamily | SSF101936 | 1.04E-8 | 62 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.924 | 77 | 131 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MEGGQAVLGT AGASAARRCG RLHGCRRARG GTASSEQCSV PTRVAETFAV QFSERYINKY 60 IGSPIDDLMV SMAGTTQSYQ MRLKRSKDSS AMLTTGWNQL IDAKAFDEGD VCLFHFKEVD 120 DVLVLKVHVL K |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC104428 | 1e-141 | AC104428.2 Oryza sativa Japonica Group chromosome 3 clone OJ1123F12, complete sequence. | |||
GenBank | AP014959 | 1e-141 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-141 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | B7EIH2 | 8e-59 | Y3643_ORYSJ; B3 domain-containing protein Os03g0164300 | ||||
TrEMBL | A0A0E0NQ33 | 5e-93 | A0A0E0NQ33_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G04510.1 | 8e-94 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19020 | 5 | 5 |
Publications ? help Back to Top | |||
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