PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G03680.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1471aa    MW: 161279 Da    PI: 6.1052
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G03680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-0513611386123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                       ++C    C+++F +k +L+ H+r+ +
  ORUFI03G03680.1 1361 FQCDieFCDMTFETKAELRAHQRNiC 1386
                       899999*****************877 PP
2zf-C2H212.60.0004213861408323
                       ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                       C+   Cgk+Fs++ +LkrH+ +H
  ORUFI03G03680.1 1386 CTdeSCGKRFSSHKYLKRHQCVH 1408
                       77778***************998 PP
3zf-C2H213.70.0001914441470123
                       EEET..TTTEEESSHHHHHHHHHH..T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                       ykC+  dCg+sF+  s++ rH ++  H
  ORUFI03G03680.1 1444 YKCSapDCGQSFRYVSDYSRHRKKfnH 1470
                       99********************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005459.1E-132970IPR003349JmjN domain
PROSITE profilePS5118313.6053071IPR003349JmjN domain
PfamPF023754.3E-133164IPR003349JmjN domain
SuperFamilySSF511973.84E-28212394No hitNo description
SMARTSM005588.5E-49229398IPR003347JmjC domain
PROSITE profilePS5118434.774232398IPR003347JmjC domain
PfamPF023733.0E-37262381IPR003347JmjC domain
Gene3DG3DSA:3.30.160.602.1E-413551383IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551213611383IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.53813611383IPR007087Zinc finger, C2H2
SMARTSM003552.313841408IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.00613841413IPR007087Zinc finger, C2H2
PROSITE patternPS00028013861408IPR007087Zinc finger, C2H2
SuperFamilySSF576671.4E-613861420No hitNo description
Gene3DG3DSA:3.30.160.604.9E-713901414IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.01E-1014081464No hitNo description
SMARTSM003556.6E-414141438IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.96714141443IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.9E-1114151438IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014161438IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-1014391466IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.1414441470IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.36514441471IPR007087Zinc finger, C2H2
PROSITE patternPS00028014461470IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1471 aa     Download sequence    Send to blast
MPPQPPPAAS ASASAPDPAV PAWLRGLPRA PEYRPTESEF ADPIAFLSRV EREAAAYGIC  60
KVIPPHPRPS RRFVFAHLNR SLVSSCDAPA PSPAAASDSS IPPSSSSPPP VSAAVFTTRH  120
QELGNPRRGR PTPQVLKQVW QSGERYTLDQ FESKSRAFSK THLAGLHEPT ALAVESLFWK  180
ASADRPIYIE YANDVPGSGF AAPVQLQRKK KQKRETAPMD EWEKSSGWRL SNSPWNLQAI  240
ARAPGSLTRF MPDDVPGVTS PMVYIGMLFS WFAWHVEDHD LHSLNFLHTG APKTWYAVPG  300
DRAVELEEVI RVHGYGGNTD RIASLAVLGE KTTLMSPEVL IDNGVPCCRL VQYPGEFVVT  360
FPRAYHVGFS HGFNCGEAAN FATPQWLKFA KEAAVRRAVM NYLPMLSHQQ LLYLLAVSFI  420
SRNPRELLSG IRTSRLRDRK KEDRELLVKQ EFLQDMISEN ELICSFLGKK SVDNVVLWEP  480
DLLPSLTALH PCSSCSKAPE KKGEDGPRIG STQSSSKDDS SSDGTACMTG TQSKGLSMDS  540
KQAPEGEKLD TDDGDDLPFD LSIDSGSLTC VACGILGYPF MAILQPSRKA LEEISLVDKE  600
RYKLSCEKEI CSNVLPCSPN DGSSGCPLIA NRSSSPVENA NLSHQDVKPI RSDISLMGKE  660
FNGTLGKHIG TSCSCSSENT IHPYGDTETP EKKIPSDCPG SELSKQSGRG DVNVPDVEGS  720
EETISWNTGC AFARPRIFCL QHALEIEELL ASKGGVHALI ICHADYVKLK ALAISIAEEI  780
EFQFDYKDVA LANASKSNLH LINISIDDEG YEEEGTDWTS RMGLNLKHSS KIRKETPESQ  840
EQPPLSFWGL FSKPSPISVV SNLKWLCRKA RTPYKVIGYA SSPDVVATPD KVKPAVTKTQ  900
IDTSGNAHEN IGSEQTLQQD CVLQESNDVA DMCKRPKVND QDGHSLINIP IAVAEYPMMH  960
QVCERPDSPT TVAVSAGKPT REQCGAESTE LSTVKQFLDN GLIAEGGSMN FISNHEHLES  1020
DNATSVCKDE QLQVQQDQLA MVLCNNPNTE LVAGELHGGA ASSTLENEDS CGNTSYCSDT  1080
VLKNSKPDTD DQPETCDRSV VLVTPKSSCD QMISSSDRSC SLTLDCPVST DAAFSSEKLS  1140
MAHDLMGSEL QAVHNSKAEV VASLTDVKGA KLNSIHTAQL PHESPSSDFI ISEGAQSAST  1200
TAIPRKNGTS MHTESNSIDI LLGVLADESK VSSGKDEVGK ASLTLMTLAG NDQSADDVTQ  1260
DEVAEITDPS HGFCSSDIVS RSIGSSNRTN IICYARRKHK RKSGSEFNIN SPQSLGSFVR  1320
SPCESLRPRT RPAIVEDMTN ETKTAEASTA NKRKKAKVEA FQCDIEFCDM TFETKAELRA  1380
HQRNICTDES CGKRFSSHKY LKRHQCVHRD ERPFKCPWDG CPMTFKWLWA QTEHIRVHTG  1440
ERPYKCSAPD CGQSFRYVSD YSRHRKKFNH Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A3e-74234128346Transcription factor jumonji (Jmj) family protein
6ip4_A3e-74234128346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206213QRKKKQKR
2207214RKKKQKRE
312951301RRKHKRK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1376350.0AC137635.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0038D20, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630480.10.0lysine-specific demethylase SE14-like isoform X1
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A0E0NPS40.0A0A0E0NPS4_ORYRU; Uncharacterized protein
STRINGORUFI03G03680.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein