PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G02540.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 406aa    MW: 43396.9 Da    PI: 4.665
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G02540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.2e-12185227754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  ORUFI03G02540.1 185 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 227
                      79*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.129178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-16183256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-13184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15185248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.26E-5185232No hitNo description
PfamPF000102.0E-9185227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MELDEESFLD ELMSLRRDGS APWQAPPYPG GGGGGGGGGM MMSDLLFYGG DGGSAEARGG  60
MDASPFQELA SMAAPPPQHP HEEFNFDCLS EVCNPYRSCG AQLVPSEAAS QTQTQLTPLR  120
DAMVAEEETS GDKALLHGGG GSSSPTFMFG GGAGESSEMM AGIRGVGGGV HPRSKLHGTP  180
SKNLMAERRR RKRLNDRLSM LRSIVPKISK MDRTSILGDT IDYVKELTER IKTLEEEIGV  240
TPEELDLLNT MKDSSSGNNN EMLVRNSTKF DVENRGSGNT RIEICCPANP GVLLSTVSAL  300
EVLGLEIEQC VVSCFSDFGM QASCLQEDGK RQVVSTDEIK QTLFRSAGYG GSSGSTSFLN  360
TPESKLKICS SIVSFAFVNR YGNRPCDLSN IGFELNAKVP IVCTLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186193ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0600290.0AK060029.1 Oryza sativa Japonica Group cDNA clone:006-303-F08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629094.10.0transcription factor bHLH93
TrEMBLA0A0E0NPC30.0A0A0E0NPC3_ORYRU; Uncharacterized protein
STRINGORUFI03G02540.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.18e-58beta HLH protein 93