PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G01570.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 191aa    MW: 22210.2 Da    PI: 6.6858
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G01570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.54.6e-081311741454
                      HHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  14 eLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +L++  +   k +yp+++++++L +++gL+ +q+ +WF N+R +
  ORUFI03G01570.1 131 ILKQWWQqhsKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 174
                      5555555222469*****************************87 PP
2ELK26.31.7e-0995116122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK +L++++++++ ++++E++
  ORUFI03G01570.1  95 ELKIELKQGFKSRIEDVREEIL 116
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012564.7E-8138IPR005541KNOX2
PfamPF037912.0E-10237IPR005541KNOX2
PROSITE profilePS512139.13295115IPR005539ELK domain
PROSITE profilePS5007111.693115178IPR001356Homeobox domain
SMARTSM003894.9E-10117182IPR001356Homeobox domain
SuperFamilySSF466892.35E-16117182IPR009057Homeodomain-like
CDDcd000866.30E-11118179No hitNo description
Gene3DG3DSA:1.10.10.601.9E-25122181IPR009057Homeodomain-like
PfamPF059205.0E-18135174IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MMLLCSFREQ LQQHVRVHAV EAVMACREIE QSLQDLTGAT LEEGTGATMS EDEDETAPML  60
EGPMDMGSDG HDLMGFGPLM PTDSERSLME RVRQELKIEL KQGFKSRIED VREEILRKRR  120
AGKLPGDTTT ILKQWWQQHS KWPYPTEDDK AKLVEETGLQ LKQINNWFIN QRKRNWHNNS  180
QTSTLKSKRK R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171190RKRNWHNNSQTSTLKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076290.0AB007629.1 Oryza sativa Japonica Group HOS66 mRNA, partial cds.
GenBankAB0618190.0AB061819.1 Oryza sativa Japonica Group HOS66 mRNA for KNOX family class 2 homeodomain protein, complete cds.
GenBankAK0603160.0AK060316.1 Oryza sativa Japonica Group cDNA clone:001-007-E04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628919.11e-141homeobox protein knotted-1-like 3
SwissprotQ94LW31e-142KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLA0A0D3FD671e-140A0A0D3FD67_9ORYZ; Uncharacterized protein
TrEMBLB8ALY81e-140B8ALY8_ORYSI; Uncharacterized protein
STRINGORUFI03G01570.21e-140(Oryza rufipogon)
STRINGOS03T0123500-021e-140(Oryza sativa)
STRINGONIVA03G01480.21e-140(Oryza nivara)
STRINGORGLA03G0016000.11e-140(Oryza glaberrima)
STRINGOBART03G01840.31e-140(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-105KNOTTED-like homeobox of Arabidopsis thaliana 7