PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G01160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 20870.1 Da PI: 4.9037 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56 | 1e-17 | 24 | 74 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+G+r + +g+Wv+eIr+p gk+ r++lg++ t+e+Aa+a++aa+++l+g+ ORUFI03G01160.1 24 PVYRGIRLR--SGKWVSEIREP---GKSSRIWLGTYPTPEMAAAAYDAAALALRGA 74 68****986..5*********8...557*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.1E-11 | 24 | 73 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-18 | 25 | 81 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.126 | 25 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-27 | 25 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-27 | 25 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-6 | 26 | 37 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.78E-15 | 26 | 81 | No hit | No description |
PRINTS | PR00367 | 1.3E-6 | 63 | 83 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MDRDESLGTQ PLTGRRVRAD TRHPVYRGIR LRSGKWVSEI REPGKSSRIW LGTYPTPEMA 60 AAAYDAAALA LRGADAALNF PGTATSRPAP ASGSPDDIRA AAAAAAAMIG SGHRGNQRAA 120 DASTSRAATA APEAAVAAGA GDQKRVVDED DVFEMPRLLV SMAEGLMMSP PRLSPSTDGV 180 GGVSPEDDED EDGMSLWNHS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134236 | 0.0 | AC134236.4 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0056G13, complete sequence. | |||
GenBank | AK108930 | 0.0 | AK108930.1 Oryza sativa Japonica Group cDNA clone:002-153-A05, full insert sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880266.1 | 1e-139 | ethylene-responsive transcription factor ERF027 | ||||
Refseq | XP_025880267.1 | 1e-139 | ethylene-responsive transcription factor ERF027 | ||||
TrEMBL | A0A0E0NNU6 | 1e-138 | A0A0E0NNU6_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q10SM1 | 1e-138 | Q10SM1_ORYSJ; AP2 domain containing protein, expressed | ||||
STRING | ORUFI03G01160.1 | 1e-139 | (Oryza rufipogon) | ||||
STRING | OS03T0117900-01 | 1e-139 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 4e-30 | ERF family protein |