PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G00820.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 730aa    MW: 77036.5 Da    PI: 7.1062
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G00820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix98.94.4e-3166150187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW++qe+laL+++r+em+ ++r+++lk+plWeevs+k++e g++rs+k+C+ek+en+ k+yk++k+g+ +r  ++ +t+++f++lea
  ORUFI03G00820.1  66 RWPRQETLALLKIRSEMDAAFREAALKGPLWEEVSRKLAEMGYKRSAKKCREKFENVDKYYKRTKDGRAGR--GDGKTYRFFTELEA 150
                      8********************************************************************97..77778******985 PP
2trihelix107.87e-34423508187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k ev+aLi++r+e+e+r++++  k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy++ql+a
  ORUFI03G00820.1 423 RWPKAEVHALIQLRTELETRYQDSGPKGPLWEDISAGMRRLGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYYHQLDA 508
                      8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.004763125IPR001005SANT/Myb domain
PfamPF138371.4E-2165151No hitNo description
PROSITE profilePS500906.82965123IPR017877Myb-like domain
CDDcd122031.15E-2865130No hitNo description
PROSITE profilePS500907.201416480IPR017877Myb-like domain
SMARTSM007170.0051420482IPR001005SANT/Myb domain
PfamPF138371.9E-23422509No hitNo description
CDDcd122033.29E-29423487No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MQQPGMPPFS AAGGEGAPSP ISSRPPPPEQ AAAAAAEEQL NGSSLEHDGV LGGEEGDRGG  60
SSAGNRWPRQ ETLALLKIRS EMDAAFREAA LKGPLWEEVS RKLAEMGYKR SAKKCREKFE  120
NVDKYYKRTK DGRAGRGDGK TYRFFTELEA LHGAAAATAR PPPVSLAPAP VAVAPPATPA  180
GLSALRVHAS PPPPPVKQHA APPPPVMDVA ACVMTMDDVS FSSGSDTEET AEEGGKRKRR  240
GGGGIGGGGG GGKAMRMFEG LMRQVMERQE AMQQRLLEAI ERRDQERMIR EEAWRRQEVA  300
RLAREQDALA QERAIAASRD AAVISFIQRV TGQSIAAVPP PPLQPTPVAS AAPPPPPQHH  360
HQQTPPPIQV QPHHIMPMTP QPQLQPPQPQ SKEANTVVRA APPPQEQHDT AASGGGGGAS  420
SSRWPKAEVH ALIQLRTELE TRYQDSGPKG PLWEDISAGM RRLGYSRSSK RCKEKWENIN  480
KYFKKVKESN KKRPEDSKTC PYYHQLDALY RTKAANAAAA ASASPAPATT TVLAPVPLSQ  540
TPPHVDHGGS NGNGNGWASA NNGGGGSSSG GMQTKASNNG TATAGGLPVV SVAGGNGNGN  600
GVAATTDNKG SKQVPVAKET AGQRQPQPLA MNHNYGNDRM ADDMDSDSMD DDDDDDEFDD  660
DENDDDIGGG KMQVQYETSS HFQRPQLQNQ NVVVGRPNAS GGGGGGAPTT PAGPPPPAAT  720
SGTSFLACVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239252RGGGGIGGGGGGGK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2418000.0AK241800.1 Oryza sativa Japonica Group cDNA, clone: J065208I24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628078.10.0trihelix transcription factor GTL1
TrEMBLA0A0E0NNQ00.0A0A0E0NNQ0_ORYRU; Uncharacterized protein
STRINGORUFI03G00820.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-47Trihelix family protein