PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G00760.3
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 1692aa    MW: 185907 Da    PI: 5.0821
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G00760.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.68e-0716721692526
                       --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH    5 lCrffartGtCkyGdrCkFaHg 26  
                       +C+ f+++G+C+ G++C++ H+
  ORUFI03G00760.3 1672 ICK-FLENGYCRKGASCNYLHP 1692
                       799.*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.98E-8109161IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.9E-9110168IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd155681.04E-19116161No hitNo description
SMARTSM002491.6E-6116162IPR001965Zinc finger, PHD-type
PROSITE patternPS013590117177IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001512.7E-5259347IPR019835SWIB domain
SuperFamilySSF475926.54E-22265344IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.101.0E-26266349IPR003121SWIB/MDM2 domain
PfamPF022011.0E-16269342IPR003121SWIB/MDM2 domain
SuperFamilySSF1590423.92E-34403528IPR004343Plus-3 domain
SMARTSM007191.6E-43403512IPR004343Plus-3 domain
PROSITE profilePS5136031.898403535IPR004343Plus-3 domain
PfamPF031262.2E-25408511IPR004343Plus-3 domain
SuperFamilySSF552771.31E-15657723IPR003169GYF domain
PROSITE profilePS5082914.522670722IPR003169GYF domain
SMARTSM004442.0E-13671724IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.3E-14672723IPR003169GYF domain
PfamPF022133.3E-9673712IPR003169GYF domain
PROSITE profilePS5010313.56316671692IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.16E-516691691IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-416721692IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034968Biological Processhistone lysine methylation
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1692 aa     Download sequence    Send to blast
MEGAAAAAGG GEMLSPGEAD WPPELRLPPP PPPSAASEGE PPPARAAVGM DDSQFLGSII  60
GLPAQPPQAT AEALAVVGVK RRRGRPPKKR DGAAAATAVV PAARPARRRE DEEEVVCFIC  120
FDGGNLVVCD RRGCPKVYHP ACIKRDEAFF QSRSKWNCGW HICSSCEKAV HYMCYTCTYS  180
LCKVCIKQGK FFSVRGTKGF CDTCYSTILL IESKDEGDTK IVVDFDDQNS WEYLFKLYWV  240
ETVTRDDGTL PNKVPTEEAS LPVDTKWASP ELLEFVGHMR DGDQSFISQF DVQALLLDYI  300
KQNNLRDPQR KSQIICDSRL HRLFRKTRVA HFEMLKLLEM HFIVSEPSAV NDGSQGIINP  360
DSAQIDHASG YNDMAAKFSP DRRRRMHRKM EREPQANPED YAAIDMHNIN LIYLRRSLME  420
DLIDDPTLSD KISGAFVRIR ISGLGQKQDM YRLVKVVGTH KVSEKYSIGK KMTNFALEIM  480
NLNKKEIITM DTVSNQDFTE EECKRLRQSM KYDLISRLKV GDIQEKAKIF QFVRVNDLLN  540
TPEERARRIN EVLDVHVDSH MDPDYESDDE FGNKKAVERS VNWARSDPFV SPVKVKYSNS  600
SQKNGDATRH LKNLSKQNTE RKSGAARNFE NSHSPVGMDI PKSGTNVKST RCETTSPSSH  660
GVVSSDMEPE KVWHYKDPSG NVQGPFTLVQ LSKWTSYFPR DMRVWLTFES EERSLLLTEV  720
LSKQPKDFGQ PASVTTSSKS TVADTGQNRN TEIVDLNKAP SPVGYSMLNS FETTVQSTKH  780
SAPERESVNS LDDRLSHSTD SVPPKDANAS NSQAMCQIKH SGSLPSPGSP HQRSDLHHDE  840
VQGGRSGEWN NQHNSELWSP SMPQTSSSAH SNVESHHDHY PSWSQVQHDP KNSLQAGSGK  900
DLNSRYDIAQ KLPSQRITRD VPSPVFAWSP SESRTASSQH EGSCLSSTTN LCTHDELHSS  960
IASAKAKSFA PATPVEDRGS SSPSGMLSLS ERAPICSPQS APSASASDTC KMEENMNQQK  1020
TLEADISNTS VNQSPQSKIL PESSPDNQDA EHEYRSPPPI SESKELSPQS RTTPGSSPDN  1080
QDTEREYPSP PPISGSKEIS PQSRTILESS PDNQDNGHEY PSPPPIPESI ELSPHSKALP  1140
ESSPDNQDIE PECPSPPQIP ESKELSRQSK ILPESSPGNQ DIEPECPSPP QIPESKELSQ  1200
QSKILPESSP DNHDIKCEYS SPTPIPESKE LSLQSKILPE SSSDNQDIKC EDPSPTPISK  1260
SKEVSPQSKI LSESYLDNQD VERECPSSIL ITESKELAVD LPGSISLAPE KTASTDVGEN  1320
SSLAFIFPKS TLAGDDALKS VFDMAKAHLE CEDSKVKEEL YVESTVVIRD DMVVNPASGV  1380
ESIDMSENLL ESLMEQSCGT FYMDGTTALE GFLSGSTKEE PQCSSPIALS TCSSPIALSP  1440
WGEHGYYQGD SVGSSLWGVQ DDDPIGNIWP LSSQAPALQY SSGSTAHFID EATVTHGNNG  1500
VVLSSTPGEE VGLPNSGVCT DWGLVEQVNP ETNDASVSMI DKNSGLVDSQ PSANDGSDVG  1560
TARNTNHNTN LSLNHETAVP LSRSSGEASR KHGFITDLNV ATSEEALGNT KNWNPYAGNA  1620
NRGSQRNHHR DRYSQISESW LLSSNYSRSR SDGFGTGGSS RSTPRGQTQR GICKFLENGY  1680
CRKGASCNYL HP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1214900.0AC121490.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0005F16, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630500.10.0zinc finger CCCH domain-containing protein 20 isoform X2
TrEMBLA0A0E0NNP30.0A0A0E0NNP3_ORYRU; Uncharacterized protein
STRINGORUFI03G00760.20.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.11e-158DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding