PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G00760.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 1719aa MW: 189165 Da PI: 5.1146 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.5 | 8.2e-07 | 1699 | 1719 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+++G+C+ G++C++ H+ ORUFI03G00760.2 1699 ICK-FLENGYCRKGASCNYLHP 1719 799.*****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 5.09E-8 | 110 | 161 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 5.9E-9 | 110 | 168 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd15568 | 1.07E-19 | 116 | 161 | No hit | No description |
SMART | SM00249 | 1.6E-6 | 116 | 162 | IPR001965 | Zinc finger, PHD-type |
PROSITE pattern | PS01359 | 0 | 117 | 177 | IPR019786 | Zinc finger, PHD-type, conserved site |
SMART | SM00151 | 2.7E-5 | 259 | 347 | IPR019835 | SWIB domain |
SuperFamily | SSF47592 | 6.76E-22 | 265 | 344 | IPR003121 | SWIB/MDM2 domain |
Gene3D | G3DSA:1.10.245.10 | 1.0E-26 | 266 | 349 | IPR003121 | SWIB/MDM2 domain |
Pfam | PF02201 | 1.0E-16 | 269 | 342 | IPR003121 | SWIB/MDM2 domain |
SuperFamily | SSF159042 | 4.05E-34 | 403 | 528 | IPR004343 | Plus-3 domain |
SMART | SM00719 | 1.6E-43 | 403 | 512 | IPR004343 | Plus-3 domain |
PROSITE profile | PS51360 | 31.898 | 403 | 535 | IPR004343 | Plus-3 domain |
Pfam | PF03126 | 2.3E-25 | 408 | 511 | IPR004343 | Plus-3 domain |
SuperFamily | SSF55277 | 1.31E-15 | 684 | 750 | IPR003169 | GYF domain |
PROSITE profile | PS50829 | 14.522 | 697 | 749 | IPR003169 | GYF domain |
SMART | SM00444 | 2.0E-13 | 698 | 751 | IPR003169 | GYF domain |
Gene3D | G3DSA:3.30.1490.40 | 1.3E-14 | 699 | 750 | IPR003169 | GYF domain |
Pfam | PF02213 | 3.4E-9 | 700 | 739 | IPR003169 | GYF domain |
PROSITE profile | PS50103 | 13.563 | 1694 | 1719 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.32E-5 | 1696 | 1718 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-4 | 1699 | 1719 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0034968 | Biological Process | histone lysine methylation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1719 aa Download sequence Send to blast |
MEGAAAAAGG GEMLSPGEAD WPPELRLPPP PPPSAASEGE PPPARAAVGM DDSQFLGSII 60 GLPAQPPQAT AEALAVVGVK RRRGRPPKKR DGAAAATAVV PAARPARRRE DEEEVVCFIC 120 FDGGNLVVCD RRGCPKVYHP ACIKRDEAFF QSRSKWNCGW HICSSCEKAV HYMCYTCTYS 180 LCKVCIKQGK FFSVRGTKGF CDTCYSTILL IESKDEGDTK IVVDFDDQNS WEYLFKLYWV 240 ETVTRDDGTL PNKVPTEEAS LPVDTKWASP ELLEFVGHMR DGDQSFISQF DVQALLLDYI 300 KQNNLRDPQR KSQIICDSRL HRLFRKTRVA HFEMLKLLEM HFIVSEPSAV NDGSQGIINP 360 DSAQIDHASG YNDMAAKFSP DRRRRMHRKM EREPQANPED YAAIDMHNIN LIYLRRSLME 420 DLIDDPTLSD KISGAFVRIR ISGLGQKQDM YRLVKVVGTH KVSEKYSIGK KMTNFALEIM 480 NLNKKEIITM DTVSNQDFTE EECKRLRQSM KYDLISRLKV GDIQEKAKIF QFVRVNDWFE 540 NEKQKLCHLR DRASETGQCV EKLQLLNTPE ERARRINEVL DVHVDSHMDP DYESDDEFGN 600 KKAVERSVNW ARSDPFVSPV KVKYSNSSQK NGDATRHLKN LSKQNTERKS GAARNFENSH 660 SPVGMDIPKS GTNVKSTRCE TTSPSSHGVV SSDMEPEKVW HYKDPSGNVQ GPFTLVQLSK 720 WTSYFPRDMR VWLTFESEER SLLLTEVLSK QPKDFGQPAS VTTSSKSTVA DTGQNRNTEI 780 VDLNKAPSPV GYSMLNSFET TVQSTKHSAP ERESVNSLDD RLSHSTDSVP PKDANASNSQ 840 AMCQIKHSGS LPSPGSPHQR SDLHHDEVQG GRSGEWNNQH NSELWSPSMP QTSSSAHSNV 900 ESHHDHYPSW SQVQHDPKNS LQAGSGKDLN SRYDIAQKLP SQRITRDVPS PVFAWSPSES 960 RTASSQHEGS CLSSTTNLCT HDELHSSIAS AKAKSFAPAT PVEDRGSSSP SGMLSLSERA 1020 PICSPQSAPS ASASDTCKME ENMNQQKTLE ADISNTSVNQ SPQSKILPES SPDNQDAEHE 1080 YRSPPPISES KELSPQSRTT PGSSPDNQDT EREYPSPPPI SGSKEISPQS RTILESSPDN 1140 QDNGHEYPSP PPIPESIELS PHSKALPESS PDNQDIEPEC PSPPQIPESK ELSRQSKILP 1200 ESSPGNQDIE PECPSPPQIP ESKELSQQSK ILPESSPDNH DIKCEYSSPT PIPESKELSL 1260 QSKILPESSS DNQDIKCEDP SPTPISKSKE VSPQSKILSE SYLDNQDVER ECPSSILITE 1320 SKELAVDLPG SISLAPEKTA STDVGENSSL AFIFPKSTLA GDDALKSVFD MAKAHLECED 1380 SKVKEELYVE STVVIRDDMV VNPASGVESI DMSENLLESL MEQSCGTFYM DGTTALEGFL 1440 SGSTKEEPQC SSPIALSTCS SPIALSPWGE HGYYQGDSVG SSLWGVQDDD PIGNIWPLSS 1500 QAPALQYSSG STAHFIDEAT VTHGNNGVVL SSTPGEEVGL PNSGVCTDWG LVEQVNPETN 1560 DASVSMIDKN SGLVDSQPSA NDGSDVGTAR NTNHNTNLSL NHETAVPLSR SSGEASRKHG 1620 FITDLNVATS EEALGNTKNW NPYAGNANRG SQRNHHRDRY SQISESWLLS SNYSRSRSDG 1680 FGTGGSSRST PRGQTQRGIC KFLENGYCRK GASCNYLHP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC121490 | 0.0 | AC121490.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0005F16, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630500.1 | 0.0 | zinc finger CCCH domain-containing protein 20 isoform X2 | ||||
TrEMBL | A0A0E0NNP2 | 0.0 | A0A0E0NNP2_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G00760.2 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2709 | 18 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16485.1 | 1e-172 | nucleic acid binding;zinc ion binding;DNA binding |