PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G00760.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 1719aa    MW: 189165 Da    PI: 5.1146
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G00760.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.2e-0716991719526
                       --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH    5 lCrffartGtCkyGdrCkFaHg 26  
                       +C+ f+++G+C+ G++C++ H+
  ORUFI03G00760.2 1699 ICK-FLENGYCRKGASCNYLHP 1719
                       799.*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.09E-8110161IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.9E-9110168IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd155681.07E-19116161No hitNo description
SMARTSM002491.6E-6116162IPR001965Zinc finger, PHD-type
PROSITE patternPS013590117177IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001512.7E-5259347IPR019835SWIB domain
SuperFamilySSF475926.76E-22265344IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.101.0E-26266349IPR003121SWIB/MDM2 domain
PfamPF022011.0E-16269342IPR003121SWIB/MDM2 domain
SuperFamilySSF1590424.05E-34403528IPR004343Plus-3 domain
SMARTSM007191.6E-43403512IPR004343Plus-3 domain
PROSITE profilePS5136031.898403535IPR004343Plus-3 domain
PfamPF031262.3E-25408511IPR004343Plus-3 domain
SuperFamilySSF552771.31E-15684750IPR003169GYF domain
PROSITE profilePS5082914.522697749IPR003169GYF domain
SMARTSM004442.0E-13698751IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.3E-14699750IPR003169GYF domain
PfamPF022133.4E-9700739IPR003169GYF domain
PROSITE profilePS5010313.56316941719IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.32E-516961718IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-416991719IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034968Biological Processhistone lysine methylation
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1719 aa     Download sequence    Send to blast
MEGAAAAAGG GEMLSPGEAD WPPELRLPPP PPPSAASEGE PPPARAAVGM DDSQFLGSII  60
GLPAQPPQAT AEALAVVGVK RRRGRPPKKR DGAAAATAVV PAARPARRRE DEEEVVCFIC  120
FDGGNLVVCD RRGCPKVYHP ACIKRDEAFF QSRSKWNCGW HICSSCEKAV HYMCYTCTYS  180
LCKVCIKQGK FFSVRGTKGF CDTCYSTILL IESKDEGDTK IVVDFDDQNS WEYLFKLYWV  240
ETVTRDDGTL PNKVPTEEAS LPVDTKWASP ELLEFVGHMR DGDQSFISQF DVQALLLDYI  300
KQNNLRDPQR KSQIICDSRL HRLFRKTRVA HFEMLKLLEM HFIVSEPSAV NDGSQGIINP  360
DSAQIDHASG YNDMAAKFSP DRRRRMHRKM EREPQANPED YAAIDMHNIN LIYLRRSLME  420
DLIDDPTLSD KISGAFVRIR ISGLGQKQDM YRLVKVVGTH KVSEKYSIGK KMTNFALEIM  480
NLNKKEIITM DTVSNQDFTE EECKRLRQSM KYDLISRLKV GDIQEKAKIF QFVRVNDWFE  540
NEKQKLCHLR DRASETGQCV EKLQLLNTPE ERARRINEVL DVHVDSHMDP DYESDDEFGN  600
KKAVERSVNW ARSDPFVSPV KVKYSNSSQK NGDATRHLKN LSKQNTERKS GAARNFENSH  660
SPVGMDIPKS GTNVKSTRCE TTSPSSHGVV SSDMEPEKVW HYKDPSGNVQ GPFTLVQLSK  720
WTSYFPRDMR VWLTFESEER SLLLTEVLSK QPKDFGQPAS VTTSSKSTVA DTGQNRNTEI  780
VDLNKAPSPV GYSMLNSFET TVQSTKHSAP ERESVNSLDD RLSHSTDSVP PKDANASNSQ  840
AMCQIKHSGS LPSPGSPHQR SDLHHDEVQG GRSGEWNNQH NSELWSPSMP QTSSSAHSNV  900
ESHHDHYPSW SQVQHDPKNS LQAGSGKDLN SRYDIAQKLP SQRITRDVPS PVFAWSPSES  960
RTASSQHEGS CLSSTTNLCT HDELHSSIAS AKAKSFAPAT PVEDRGSSSP SGMLSLSERA  1020
PICSPQSAPS ASASDTCKME ENMNQQKTLE ADISNTSVNQ SPQSKILPES SPDNQDAEHE  1080
YRSPPPISES KELSPQSRTT PGSSPDNQDT EREYPSPPPI SGSKEISPQS RTILESSPDN  1140
QDNGHEYPSP PPIPESIELS PHSKALPESS PDNQDIEPEC PSPPQIPESK ELSRQSKILP  1200
ESSPGNQDIE PECPSPPQIP ESKELSQQSK ILPESSPDNH DIKCEYSSPT PIPESKELSL  1260
QSKILPESSS DNQDIKCEDP SPTPISKSKE VSPQSKILSE SYLDNQDVER ECPSSILITE  1320
SKELAVDLPG SISLAPEKTA STDVGENSSL AFIFPKSTLA GDDALKSVFD MAKAHLECED  1380
SKVKEELYVE STVVIRDDMV VNPASGVESI DMSENLLESL MEQSCGTFYM DGTTALEGFL  1440
SGSTKEEPQC SSPIALSTCS SPIALSPWGE HGYYQGDSVG SSLWGVQDDD PIGNIWPLSS  1500
QAPALQYSSG STAHFIDEAT VTHGNNGVVL SSTPGEEVGL PNSGVCTDWG LVEQVNPETN  1560
DASVSMIDKN SGLVDSQPSA NDGSDVGTAR NTNHNTNLSL NHETAVPLSR SSGEASRKHG  1620
FITDLNVATS EEALGNTKNW NPYAGNANRG SQRNHHRDRY SQISESWLLS SNYSRSRSDG  1680
FGTGGSSRST PRGQTQRGIC KFLENGYCRK GASCNYLHP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1214900.0AC121490.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0005F16, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630500.10.0zinc finger CCCH domain-containing protein 20 isoform X2
TrEMBLA0A0E0NNP20.0A0A0E0NNP2_ORYRU; Uncharacterized protein
STRINGORUFI03G00760.20.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27091822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.11e-172nucleic acid binding;zinc ion binding;DNA binding