PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G00760.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 1515aa    MW: 166849 Da    PI: 5.7083
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G00760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.1e-0714951515526
                       --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH    5 lCrffartGtCkyGdrCkFaHg 26  
                       +C+ f+++G+C+ G++C++ H+
  ORUFI03G00760.1 1495 ICK-FLENGYCRKGASCNYLHP 1515
                       799.*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579034.65E-8109161IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.109.3E-9110168IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd155689.08E-20116161No hitNo description
SMARTSM002491.6E-6116162IPR001965Zinc finger, PHD-type
PROSITE patternPS013590117177IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001512.7E-5259347IPR019835SWIB domain
SuperFamilySSF475925.89E-22265344IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.108.9E-27266349IPR003121SWIB/MDM2 domain
PfamPF022018.8E-17269342IPR003121SWIB/MDM2 domain
SMARTSM007191.6E-43403512IPR004343Plus-3 domain
PROSITE profilePS5136031.898403535IPR004343Plus-3 domain
SuperFamilySSF1590423.4E-34403528IPR004343Plus-3 domain
PfamPF031262.0E-25408511IPR004343Plus-3 domain
SuperFamilySSF552771.15E-15684750IPR003169GYF domain
PROSITE profilePS5082914.522697749IPR003169GYF domain
SMARTSM004442.0E-13698751IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.1E-14699750IPR003169GYF domain
PfamPF022132.9E-9700739IPR003169GYF domain
PROSITE profilePS5010313.56314901515IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.22E-514921514IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-514951515IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034968Biological Processhistone lysine methylation
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1515 aa     Download sequence    Send to blast
MEGAAAAAGG GEMLSPGEAD WPPELRLPPP PPPSAASEGE PPPARAAVGM DDSQFLGSII  60
GLPAQPPQAT AEALAVVGVK RRRGRPPKKR DGAAAATAVV PAARPARRRE DEEEVVCFIC  120
FDGGNLVVCD RRGCPKVYHP ACIKRDEAFF QSRSKWNCGW HICSSCEKAV HYMCYTCTYS  180
LCKVCIKQGK FFSVRGTKGF CDTCYSTILL IESKDEGDTK IVVDFDDQNS WEYLFKLYWV  240
ETVTRDDGTL PNKVPTEEAS LPVDTKWASP ELLEFVGHMR DGDQSFISQF DVQALLLDYI  300
KQNNLRDPQR KSQIICDSRL HRLFRKTRVA HFEMLKLLEM HFIVSEPSAV NDGSQGIINP  360
DSAQIDHASG YNDMAAKFSP DRRRRMHRKM EREPQANPED YAAIDMHNIN LIYLRRSLME  420
DLIDDPTLSD KISGAFVRIR ISGLGQKQDM YRLVKVVGTH KVSEKYSIGK KMTNFALEIM  480
NLNKKEIITM DTVSNQDFTE EECKRLRQSM KYDLISRLKV GDIQEKAKIF QFVRVNDWFE  540
NEKQKLCHLR DRASETGQCV EKLQLLNTPE ERARRINEVL DVHVDSHMDP DYESDDEFGN  600
KKAVERSVNW ARSDPFVSPV KVKYSNSSQK NGDATRHLKN LSKQNTERKS GAARNFENSH  660
SPVGMDIPKS GTNVKSTRCE TTSPSSHGVV SSDMEPEKVW HYKDPSGNVQ GPFTLVQLSK  720
WTSYFPRDMR VWLTFESEER SLLLTEVLSK QPKDFGQPAS VTTSSKSTVA DTGQNRNTEI  780
VDLNKAPSPV GYSMLNSFET TVQSTKHSAP ERESVNSLDD RLSHSTDSVP PKDANASNSQ  840
AMCQIKHSGS LPSPGSPHQR SDLHHDEVQG GRSGEWNNQH NSELWSPSMP QTSSSAHSNV  900
ESHHDHYPSW SQVQHDPKNS LQAGSGKDLN SRYDIAQKLP SQRITRDVPS PVFAWSPSES  960
RTASSQHEGS CLSSTTNLCT HDELHSSIAS AKAKSFAPAT PVEDRGSSSP SGMLSLSERA  1020
PICSPQSAPS ASASDTCKME ENMNQQKTLE ADISNTSSKI LPESSSDNQD IKCEDPSPTP  1080
ISKSKEVSPQ SKILSESYLD NQDVERECPS SILITESKEL AVDLPGSISL APEKTASTDV  1140
GENSSLAFIF PKSTLAGDDA LKSVFDMAKA HLECEDSKVK EELYVESTVV IRDDMVVNPA  1200
SGVESIDMSE NLLESLMEQS CGTFYMDGTT ALEGFLSGST KEEPQCSSPI ALSTCSSPIA  1260
LSPWGEHGYY QGDSVGSSLW GVQDDDPIGN IWPLSSQAPA LQYSSGSTAH FIDEATVTHG  1320
NNGVVLSSTP GEEVGLPNSG VCTDWGLVEQ VNPETNDASV SMIDKNSGLV DSQPSANDGS  1380
DVGTARNTNH NTNLSLNHET AVPLSRSSGE ASRKHGFITD LNVATSEEAL GNTKNWNPYA  1440
GNANRGSQRN HHRDRYSQIS ESWLLSSNYS RSRSDGFGTG GSSRSTPRGQ TQRGICKFLE  1500
NGYCRKGASC NYLHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A8e-11104183981Histone-lysine N-methyltransferase NSD3
4gnd_C8e-11104183981Histone-lysine N-methyltransferase NSD3
4gne_A8e-11104183981Histone-lysine N-methyltransferase NSD3
4gnf_A8e-11104183981Histone-lysine N-methyltransferase NSD3
4gng_A8e-11104183981Histone-lysine N-methyltransferase NSD3
4gng_D8e-11104183981Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1120950.0AK112095.1 Oryza sativa Japonica Group cDNA clone:002-107-G01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630499.10.0zinc finger CCCH domain-containing protein 20 isoform X1
RefseqXP_015630500.10.0zinc finger CCCH domain-containing protein 20 isoform X2
TrEMBLA0A0E0NNP10.0A0A0E0NNP1_ORYRU; Uncharacterized protein
STRINGORUFI03G00760.20.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.11e-173nucleic acid binding;zinc ion binding;DNA binding