PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G00490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 297aa MW: 34032 Da PI: 6.0358 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.6 | 1.2e-49 | 23 | 150 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhP+deelv +yL++k ++++ + +++++ evd++ +ePwdLp+ +k +++ewyfFs r++kyatg r+nra k+gyWkatgkdk++ ORUFI03G00490.1 23 LPPGFRFHPSDEELVGYYLRNKQQQQQqqTAATSMLVEVDLHACEPWDLPEVAKVGSDEWYFFSWRERKYATGWRRNRASKQGYWKATGKDKPI 116 79********************99998433334569**************88888999************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 l+ ++ g +ktLvfy+grap+g+kt Wvmhe+rl ORUFI03G00490.1 117 LH--PTVAGARKTLVFYSGRAPNGRKTAWVMHEFRL 150 *9..7789**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.85E-57 | 11 | 180 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.11 | 23 | 180 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-26 | 24 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MDGLISDDSM MMGGEVRAIE SRLPPGFRFH PSDEELVGYY LRNKQQQQQQ QTAATSMLVE 60 VDLHACEPWD LPEVAKVGSD EWYFFSWRER KYATGWRRNR ASKQGYWKAT GKDKPILHPT 120 VAGARKTLVF YSGRAPNGRK TAWVMHEFRL LHHHHHPNPN IQNMQQQEGD DWVLCRVFRK 180 GNNSNGQPLA TSSPPAHHLV ESLISSPAPT IMSDHDRLFT IQLPHHQHCD EQYFFLDDDE 240 QHQQQLLDLS VLQAPTSFES EQAPGHGGME INIAEMESFD TTCAALQDAS DYCMQLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-46 | 20 | 182 | 12 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070416 | 0.0 | AK070416.1 Oryza sativa Japonica Group cDNA clone:J023051N16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629924.1 | 0.0 | NAC transcription factor 32 | ||||
Swissprot | Q84TE6 | 9e-60 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0E0NNK7 | 0.0 | A0A0E0NNK7_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q10SW5 | 0.0 | Q10SW5_ORYSJ; NAC-domain containing protein 21/22, putative, expressed | ||||
STRING | ORUFI03G00490.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS03T0109000-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16917 | 12 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 2e-60 | NAC domain containing protein 74 |