PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G40020.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 600aa    MW: 66141.2 Da    PI: 4.9905
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G40020.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-066687426
                     ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                     ++C +f++ G C  GdrC F H 
  ORUFI02G40020.2 66 VPCYYFQK-GMCVKGDRCAFLHL 87
                     69******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.418126IPR000571Zinc finger, CCCH-type
SMARTSM003562.5225IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5546289IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-56388IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.83E-56586IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-46786IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MNPRDCWYWF NGNCANPKCS FRHPPLDGLV GAPTTPRTSQ QSAPQVSVPA QAPVPNPASG  60
TAKQGVPCYY FQKGMCVKGD RCAFLHLPQA TGSPAPQHTT KVFAPASVPH PQLKNSWTKP  120
NSSAQQNAPP AIFDKPKDSA HNGKTAQKQN LTNRAGHSSG IIHDKKGSYM PSGVTKNYRP  180
PPSTGDDLAE NGVEMGEFVR EPSPGSDVLT GGADDNTEQS LREDRGAYRR TNGEQHIGML  240
RQTHDSYGFE RSHRGSAEKL LSESRFSQRE PMPLTADSSD LRQRLLKQRR LNNPRSGQVS  300
DRHNVYPEDE RHDRHRQRGE EQASNDGVSS SRLRGRIRLP AETTFDRLGL QPEKERDRGP  360
RARLSPPSQT DLRGKLHDRL KAKPNEDVSG NVQSSLSKAN EDAESLNFAG PKSLAELKAK  420
KVAGSLMKSS RSLTGPVRMT SEIVTIKDSS DPVLFDGPKP LNAILKRKRE ADSGNATDFG  480
SKREEHSGGD EEGSQNDFRN IEDDIVGMNT EGNGEEAFQP EDDVVYGDSL SPADDIAAEA  540
ADDASRELEE QQDVETAEEY DYEMDDVNAA EENDYQEYED EDDDLEDDDD FARKVGVMIT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040820.0AP004082.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1149_C12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626089.10.0zinc finger CCCH domain-containing protein 19 isoform X2
SwissprotQ6K9770.0C3H19_ORYSJ; Zinc finger CCCH domain-containing protein 19
TrEMBLA0A0E0NNB10.0A0A0E0NNB1_ORYRU; Uncharacterized protein
STRINGORUFI02G40020.10.0(Oryza rufipogon)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]