PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G39170.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 195aa    MW: 20418.8 Da    PI: 5.4091
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G39170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000284769123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y C+ C + F++   L  H+++H
  ORUFI02G39170.1 47 YNCTFCRRGFPTAQALGGHMNVH 69
                     89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.65E-64473No hitNo description
Gene3DG3DSA:3.30.160.603.8E-44573IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.9E-64771IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.4714774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MSQKTSKDEV IGGRSPSGDG DKAEEELREA RSGDDDDDDE AGTRQPYNCT FCRRGFPTAQ  60
ALGGHMNVHR KDRVGRATPS SSSSTTAAAA RRSVSYDTLV RLFRPPASGG SEDAAASTAA  120
GGGGSLRSRT AEPAPQELRL FGRGAGRREE GGGRDRRDRY GCCSKDGDGN GGHDHGEEEE  180
LDLELRLGGS GSAGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040200.0AP004020.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1119_A01.
GenBankAP0048780.0AP004878.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0474F11.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624572.11e-134zinc finger protein 11
TrEMBLA0A0E0NMZ31e-134A0A0E0NMZ3_ORYRU; Uncharacterized protein
STRINGORUFI02G39170.11e-134(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145472224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.16e-12C2H2 family protein